Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03826 ATGGATGATGGTGAATGGGATCTTATGTCCATTGTACGCAGCTGCAAAGCTACCACCTTTACTAATCCTAATAACATATTTGAAATGTCCCCTCCACCTCAAACCCCAATTACAATCACCACCACCAACAACATTATTCCCACTCAAAACACCACACCATCTTACTTTAGTGATTTAACAGTTATCCAAAATAATAACCAAGTCCCTGTTGCCCCACTCAAACCAACCGATTTCATAGATCTAGAGAAATTGAGAATTAATTTCAATAACAACAACACTCCTTTTGATTGTGAGTACAATCATCCATCAGTTTCACCACAACCTCCGAGACATCACAATCAACTATCAATTCTACTACCACCAAAAACCCCAATTACCATCACCACCAACAATAACATTATACCCCCTCATAACACCACACTATCTTGCTTGAACGATTTTATTGCTATGCAAGAAAACACTATACCTATCCCTCCGTTTGAACCAATTAACTTTATAGATCTAGACAAATTTATATTCAATTTACATCACAACAATACACTCCAAATCCCTGCAACATTTATCCCTAGCTCCACCACCATCACGACCCCCGCCATAATCACAAACCCCACCACTTCTATCCCAACCATTGTTCCCACCTACACCACAACTGCTCATTTTGATTGTACGTACAACCATCCATCAGTTCCACAACAACCTCTGAGACTGGACAATGACCTACCCCAAAACCTAATTACCATCACTACCACCAATAACATTATACCTCCTCAAAACACTACACCATTTGACTCGAACGATTTTACTGTTATCCAAAATAATAACTCGGATCATATCCCCTCGTTTAAACCAACAAATTTTATAGATCTAGAGAAGTTTAGTTTCAATTTCAATCACAACAATACTCCTCAAATCCCTACAACAATTATCCCCAACTCGATCACCATCATGACCCCCACCATAATGACAACCTCTACCACATCTATTCCAACAATTATTCCCACCACCACCTCCTTTTCCCCCATCTCCACCGCCACTATTCCCACCTCGTCGACTACCACCGCCCTCACCCAGATCCCAACTGCTCATTTTGAATGTGCATACAATCATCCATCAGTTCCACAACAACCCTCGGGAAAACATAATCAACTACCAAATCTACAACCTCGAACTAGTTCCACAACAATCATTCCTACCACCACCACCTTTTCCCCCATCTCCACCACTATTCCAACCTCGCCAACTACCACCATCCTCACCCAGATCCCGACTACTCATTTTGACCGTGCAGATCATCCACCAGTTCCACAACAACCCTCGGGACAACATAATCAACTGGCAAATCTACAACCTCGAACTAGTTCTAGGGTTTTACCAAATACATATCCACAACAACCAAAATGCAGATCAAGAAAGAGAAAGAATGATAACCAGGTGACATTGGTGTGCCAAGTGAAGAAGGAGAATCTTTCAGAAGATCATTGGGTATGGAGAAAATATGGACAAAAATCTATTAAAGGATCTCCACATCCAAGGAGCTACTACAAATGTAGCACTTCTAAAGATTGTTCGGCAAGAAAACTAGTAGAAAAAAGCAAGACTATAGAGAACACTTATGTTTTGACATATATTGGAGTACACAATCATGAAAAACCATTGGTTACTCGGAACTCTAGAAGGTGGAGCTACCTATCTTCTCAAAGCTCTCAAATGCGTGAGTGA 1719 0.4078 MDDGEWDLMSIVRSCKATTFTNPNNIFEMSPPPQTPITITTTNNIIPTQNTTPSYFSDLTVIQNNNQVPVAPLKPTDFIDLEKLRINFNNNNTPFDCEYNHPSVSPQPPRHHNQLSILLPPKTPITITTNNNIIPPHNTTLSCLNDFIAMQENTIPIPPFEPINFIDLDKFIFNLHHNNTLQIPATFIPSSTTITTPAIITNPTTSIPTIVPTYTTTAHFDCTYNHPSVPQQPLRLDNDLPQNLITITTTNNIIPPQNTTPFDSNDFTVIQNNNSDHIPSFKPTNFIDLEKFSFNFNHNNTPQIPTTIIPNSITIMTPTIMTTSTTSIPTIIPTTTSFSPISTATIPTSSTTTALTQIPTAHFECAYNHPSVPQQPSGKHNQLPNLQPRTSSTTIIPTTTTFSPISTTIPTSPTTTILTQIPTTHFDRADHPPVPQQPSGQHNQLANLQPRTSSRVLPNTYPQQPKCRSRKRKNDNQVTLVCQVKKENLSEDHWVWRKYGQKSIKGSPHPRSYYKCSTSKDCSARKLVEKSKTIENTYVLTYIGVHNHEKPLVTRNSRRWSYLSSQSSQMRE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03826 572 MobiDBLite consensus disorder prediction 436 465 - -
Trre15g03826 572 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 564 IPR044810 GO:0003700
Trre15g03826 572 ProSiteProfiles WRKY domain profile. 485 551 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03826 572 Gene3D WRKY domain 474 552 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g03826 572 MobiDBLite consensus disorder prediction 425 475 - -
Trre15g03826 572 MobiDBLite consensus disorder prediction 372 413 - -
Trre15g03826 572 Pfam WRKY DNA -binding domain 491 549 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03826 572 SUPERFAMILY WRKY DNA-binding domain 485 551 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g03826 572 SMART WRKY_cls 490 550 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03826 Trre-Chr15 47809573 47812786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03826 468 551 WRKY Transcription Factor Family AT5G52830 59.524 5.48e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g03826 WRKY 2.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03826 - - tpra:123886355 169.474