Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03818 ATGTGGGATCTTAATGGTTCACCGTTTAAGAGAAAAGAAGAAGAAGAATCTGAAAGATGTTCTAAGACATCAATAGATGATGGAGATGATGAAAAAGGAAAAAGGGTTGGTGGATCTGTTTCAAATTCAAGTTCTTCTGCTATAGTAATCGAAGAAGATTCAGAAGAAGATCAACAACAACAACAACAAGAACAAGAACCTAAAAACAGAACCATGATGATGATGATGATGAAAAAAAGAAACAACAGTAAAATATTTGGTTTCTCTGTTACTCATGATGAACATGAAGAACAAGAACAAGAACAAGAAGAAGAAGAAGATTCTTTAGACAGTGAAAATTTTCCTGTTACAAGAAATTTCTTTCCTATGGATCAAGATTCTTCTGATAATAACATGGTTGTTGAAAATGGAGGAACAACTTGTTCTTCTTCTACTTTTCCTCGTGCTCATTGGGTTGGTGTTAAATTTTGTCAATCAGAAACACTTGGAAGTGGAAAATCAGTTGAAGTTTCATCTTCTTCTTCACAACCTATGAAAAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCACAATATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGAGTTGAGGCTGACATAAATTTTAACATAGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATTTGACAAAGGAAGAGTTTGTACACGTACTTAGGAGACAAAGCACTGGATTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTACATAAATGTGGAAGATGGGAAGCTAGAATGGGACAATTCTTAGGAAAAAAGTATGTTTATCTGGGTTTGTTTGACACTGAGGTTGAAGCTGCAAGGGCTTATGATAAAGCAGCAATAAAATGCAATGGAAAAGAGGCCGTCACAAATTTTGATCCTAGCATCTATGATAGTGAGCTTAATTCTGAACCATCAAGTAACGCTAGTGATCACAATTTGGATTTAAGTTTGGGAAACTCAAGTTCAAAATCCATCAATAATAATGCTCAAACATATGGGAATCATCACACTTCAAATGTTGCAAATCATGCATCTGATCAATCTAATTGGCAAAATGGTGGAAACATAAACAAGCCTAAGCTTGTGAATATTCTACCTAAACCATATAATAGACCAAACAACATGGAAGCATATGGAAGAGATTTGCATGGAGAGAATGAAGCTTTAAGGATGCTAAGTCAAACTCATCTTCATTCTTCATCTTCTAATGAAATGCATAGATATGGTCCCTTTAGAGATCACTCACAAATGCTTCATAGTTTCCCACATACTCACCCACCAAATTTTCATTTTCCCAGCAGCAGTTATGGAGGCCGAGTTGGAAGCGATCTTTCACTATCAACAAGCAATCAACAACAACAATGGCAATCAGGGCCACATTATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCCTCTTCTTCTTCTCAAGCTTGGCTGCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTGA 1641 0.3681 MWDLNGSPFKRKEEEESERCSKTSIDDGDDEKGKRVGGSVSNSSSSAIVIEEDSEEDQQQQQQEQEPKNRTMMMMMMKKRNNSKIFGFSVTHDEHEEQEQEQEEEEDSLDSENFPVTRNFFPMDQDSSDNNMVVENGGTTCSSSTFPRAHWVGVKFCQSETLGSGKSVEVSSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNSEPSSNASDHNLDLSLGNSSSKSINNNAQTYGNHHTSNVANHASDQSNWQNGGNINKPKLVNILPKPYNRPNNMEAYGRDLHGENEALRMLSQTHLHSSSSNEMHRYGPFRDHSQMLHSFPHTHPPNFHFPSSSYGGRVGSDLSLSTSNQQQQWQSGPHYLATAAAASSGFPPQIRPSSSSQAWLHKNGFHTLMRPS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03818 546 SUPERFAMILY DNA-binding domain 282 342 IPR016177 GO:0003677
Trre15g03818 546 CDD AP2 282 342 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 Coils Coil 92 112 - -
Trre15g03818 546 PRINTS Ethylene responsive element binding protein signature 284 295 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 PRINTS Ethylene responsive element binding protein signature 322 342 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 MobiDBLite consensus disorder prediction 347 390 - -
Trre15g03818 546 CDD AP2 191 248 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 ProSiteProfiles AP2/ERF domain profile. 283 340 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 Pfam AP2 domain 191 239 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 Pfam AP2 domain 282 331 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 MobiDBLite consensus disorder prediction 165 192 - -
Trre15g03818 546 MobiDBLite consensus disorder prediction 1 36 - -
Trre15g03818 546 ProSiteProfiles AP2/ERF domain profile. 191 247 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 FunFam AP2-like ethylene-responsive transcription factor 282 342 - -
Trre15g03818 546 MobiDBLite consensus disorder prediction 92 114 - -
Trre15g03818 546 FunFam AP2-like ethylene-responsive transcription factor 190 249 - -
Trre15g03818 546 Gene3D AP2/ERF domain 282 341 IPR036955 GO:0003700|GO:0006355
Trre15g03818 546 Gene3D AP2/ERF domain 190 249 IPR036955 GO:0003700|GO:0006355
Trre15g03818 546 SUPERFAMILY DNA-binding domain 190 248 IPR016177 GO:0003677
Trre15g03818 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 444 - -
Trre15g03818 546 MobiDBLite consensus disorder prediction 165 180 - -
Trre15g03818 546 SMART rav1_2 283 346 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 SMART rav1_2 191 253 IPR001471 GO:0003700|GO:0006355
Trre15g03818 546 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03818 Trre-Chr15 47725505 47728704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03818 1 369 AP2-EREBP Transcription Factor Family AT4G36920 63.228 1.25e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g03818 AP2 9.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03818 K09284 - gmx:100792442 692.189