Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03806 ATGGCTAGGAATTTTGAGTTCATAAAGGACATCAATGACCGTAAAGACCTATGGAAAATCGCTGTCAAGGTTAGGGACAAATGGACTTCACAGAAAGAGGGGAAAGAGTATTTGGAATTGGTTGTTGTTGACTCAAAGGGAGATGACATTTTTGTCATTGTTCCAAATGAGTTGAAAAGCAAATTTGAAAAGGAGATTCCTATTGTTGAGAAGAACACTTACACTATGCAAAATTTTCAAGTCACCAAAAATCAGGAAAAGTTCAAATCATCCCATCATGAATTCATGCTAAAGTTCAATGGTGGAACCAAGGTTTCTGAATGCAATAAACATGACATTACTGACACCCTTCACTTTAAAGATTTCACTGAAATCGTTTGTAACAAATTTCGTGAAGATTTCTTATACGATATCATAGCAGCTGTGGATGAGATTGGTTATACACAGCCTCATGTAGGAAGTAAAAAAGTACAAGTTAACTTAAAGCTTAAGGATGTTAGTGATGTTACTTTGAATTGCACTTTATGGGAAGATTATGCAACAAAGTTTCTCAATTTTTTGAATGGTAACAATGATAGTGGTCCAACCATTATTTGTATGAAATATGCCAAAATCAAGAAAGAAGGAAAATATCCACTTACTATATCCAACACATGGAGTACAACAAAACTTTGGATCAATGATGGACTGCCTGAGATTCTGGAATTCAAGAAAAGATTTGTTGCTGCAATTGATAAAGGCACAATTTCTGCTGTGTCAAATTCAATGTCACAAAGGATGAGTCAATCATATGGAGGATCACAGTACTCAAGTGGCTCACAATTTACTCCTGAACAGAAGTTTTATCACAATGCAGAAGTGATGCCTTTGAACAAAATTGTGGAACTCACTCAAGAGACAAAGTGTGTTACTGTTGTCAATTGTGTTAAGGTCAAACCCTCCAGAAATGGCTGGTACTATCAAGCTTGCTTCCAATGTCCCAAACAAGCTGTTGGTGATGCTCCACCATATAAGTGTAGTGATGATCACTCCACCCAAACTGAAATACTAAGGTATAAGTTGGATATTGAAGTGGAGAATTGCAAGGTTAGAGCTTCTTTTGTTTTTTGGGATCGCGAATGTGCACAGTTATTGAACCAATCTGCAGAACAGCTCCGTGCTAAAATGATTAAGGTAAAATTATGA 1185 0.3637 MARNFEFIKDINDRKDLWKIAVKVRDKWTSQKEGKEYLELVVVDSKGDDIFVIVPNELKSKFEKEIPIVEKNTYTMQNFQVTKNQEKFKSSHHEFMLKFNGGTKVSECNKHDITDTLHFKDFTEIVCNKFREDFLYDIIAAVDEIGYTQPHVGSKKVQVNLKLKDVSDVTLNCTLWEDYATKFLNFLNGNNDSGPTIICMKYAKIKKEGKYPLTISNTWSTTKLWINDGLPEILEFKKRFVAAIDKGTISAVSNSMSQRMSQSYGGSQYSSGSQFTPEQKFYHNAEVMPLNKIVELTQETKCVTVVNCVKVKPSRNGWYYQACFQCPKQAVGDAPPYKCSDDHSTQTEILRYKLDIEVENCKVRASFVFWDRECAQLLNQSAEQLRAKMIKVKL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03806 394 CDD RPA1_DBD_B_like 137 240 - -
Trre15g03806 394 Gene3D - 266 392 IPR012340 -
Trre15g03806 394 Gene3D - 114 249 IPR012340 -
Trre15g03806 394 Gene3D - 3 108 IPR012340 -
Trre15g03806 394 Pfam Domain of unknown function DUF223 39 135 IPR003871 -
Trre15g03806 394 SUPERFAMILY Nucleic acid-binding proteins 293 387 IPR012340 -
Trre15g03806 394 CDD RPA1_DBD_A_like 19 105 - -
Trre15g03806 394 SUPERFAMILY Nucleic acid-binding proteins 119 240 IPR012340 -
Trre15g03806 394 SUPERFAMILY Nucleic acid-binding proteins 4 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03806 Trre-Chr15 47486545 47488535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03806 18 238 Core DNA Replication Machinery Family AT4G19130 23.109 1.75e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03806 - - tpra:123887332 471.47