Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03803 ATGGCCGTGGAACTCATGACAGGTTACAACAACAACAACAACAACAGAACCGAAACTTTCACAACCAAAGCCGAAGAAAATGCTGTCCAAGAAGCAGCATCTGGTTTAGAAAGCGTTGAAAAACTCATCAAATTACTCTCACAAGCACGCCATAATCAATACCAACCTTCAAATCCCAACAACAACAACAATAACCCTTCCATGGAAATTGAAAGAGATTGCAACGCTGTTGCAGACATAGCTGTTTCCAAGTTCAAACGTGTTATCTCACTTCTTGAAAAAACCAGAACTGGTCATGCTCGTTTCAGAAAAGCACCTTTACCACAAACTCAACAGATACAAATTTCTGAAACACCAATCTTCAACGCTACACCTTTACAACAGATTCCACCATCAACAACAACAAATCTTCACCGTTCTATAATTCAGAGAAAAGATTCATCAAAAACCCTTAATTTTTCATACTCTTCTGCTGCTAATTCTTTCATTTCATCACTCACCGGCAGCGGCGGCGACACCGACAACAAACAACCTTCATCATCATCACCAGCTGGAGCTTTTCAAATAACAAATCTTTCTCATGTTTCATCTGTTGGTAAGCCACCACTTTCATCTTCTTCATTGAAAAGAAAGTGTAGCTCTGAAACTTTGGGTTCTGGAAAGTGTGGTAGTTCATCTAGCCGTTGTCATTGTTCCAAAAAGAGTAGGAAAATGAGATTGAAAAGGGTTGTTAGGGTTCCTGCAATTAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGCCAAAAACCTATTAAAGGTTCACCTCATCCAAGGGGATACTACAAGTGCAGTAGTGTGAGAGGGTGTCCAGCAAGAAAACATGTAGAGAGAGCTCTTGATGATGCATCTATGTTGGTAGTTACTTATGAAGGAGAACACAATCACTCTCTTTCTGCAGCTGATGCTACTAATCTCATTTTAGAATCATCATAA 993 0.3958 MAVELMTGYNNNNNNRTETFTTKAEENAVQEAASGLESVEKLIKLLSQARHNQYQPSNPNNNNNNPSMEIERDCNAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQTQQIQISETPIFNATPLQQIPPSTTTNLHRSIIQRKDSSKTLNFSYSSAANSFISSLTGSGGDTDNKQPSSSSPAGAFQITNLSHVSSVGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADATNLILESS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03803 330 MobiDBLite consensus disorder prediction 197 224 - -
Trre15g03803 330 FunFam WRKY transcription factor 65 241 318 - -
Trre15g03803 330 Pfam Plant zinc cluster domain 209 255 IPR018872 -
Trre15g03803 330 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03803 330 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 29 323 IPR044810 GO:0003700
Trre15g03803 330 Gene3D WRKY domain 244 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g03803 330 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03803 330 Pfam WRKY DNA -binding domain 259 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03803 330 SUPERFAMILY WRKY DNA-binding domain 254 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03803 Trre-Chr15 47436281 47437955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03803 25 315 WRKY Transcription Factor Family AT2G24570 44.892 5.50e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g03803 WRKY 9.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03803 - - gmx:100170685 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03803 15 47436281 47437955 Trre15g03803 15 47436281 47437955 ECH
Trre15g03803 15 47436281 47437955 Trre9g00806 9 6169331 6171580 PCT