Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03794 ATGTCTCAAACCAAACATCATCAACAACAACAATCTCCTTCTTTTCTCGATGCTCTTCTCTGTGAAGAGCAAAACACATTCCAAGAAGATGATTCCGATGCAAACGTTACTGATTCTGAAACATGTGTCGAAAACCCATCAACAAAGTTACAATCTTTACCTATTGTTTTACTTGAAAATGATCTTTTTTGGGAACATGATGAACTTGTTTCGTTAATTTTTAAAGAAAAAGAGACCCATTTGTTTTCTGTTATTGTTGATGGATCTTTGGAAGATTCTCGTCTTGAAGCTGTTAACTGGGTTTCTAAAGTTTGTTCTCATTATGGGTTTTCTACTTTGACTACTGTTCTTGCTGTTAACTACTTTGATAGATTTGTTACTAGTTTGTTGTTTCAAAAAGATAAACCATGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAAGAAACCCATGTGCCACTTCTTTTAGACCTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAGACTATACAAAGAATGGAGCTTTTGGTGTTGTCTACTTTGAAATGGAGGATGCATCCAGTGACACCAATTTCTTTCTTTGAACACATTGTTAGAAGACTTGGTTTGAAGAGCCGTTTGCATTGGGAGTTTATGTGGCGTTGTGAGAGGGTTCTTCTTCATGTAATTGTTGATTCAAGGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTGATCAACTTATGAGTTTACTAAAGATTAGTGAGGAACAAGTGAATGAGTGCTACAAACTTATGCTGAAGCTATTAGTTTGCAATGATGGTATTTACAGTCTTCACCAGAAACGGAAGCGTGTATCTGAACCAAGTAGCCCGGGTGGTGTGATTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACTGTGGCATCTTCAGTTTCACTTTCACTTCAGCCGATGTTTAAGAGGAGCAGAGCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAATCGTGTGTCTATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.3746 MSQTKHHQQQQSPSFLDALLCEEQNTFQEDDSDANVTDSETCVENPSTKLQSLPIVLLENDLFWEHDELVSLIFKEKETHLFSVIVDGSLEDSRLEAVNWVSKVCSHYGFSTLTTVLAVNYFDRFVTSLLFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCERVLLHVIVDSRVMMSYLPSTLAAATMIHVIKEIEPFNATEYIDQLMSLLKISEEQVNECYKLMLKLLVCNDGIYSLHQKRKRVSEPSSPGGVIDASFSCDSSNDSWTVASSVSLSLQPMFKRSRAQDQQMRLPSVNRVSIDVLNSPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03794 371 Gene3D - 91 194 - -
Trre15g03794 371 SMART cyclin_7 99 187 IPR013763 -
Trre15g03794 371 SUPERFAMILY Cyclin-like 197 299 IPR036915 -
Trre15g03794 371 Pfam Cyclin, N-terminal domain 92 193 IPR006671 -
Trre15g03794 371 FunFam D3-type cyclin 87 194 - -
Trre15g03794 371 PANTHER CYCLINS 40 292 IPR039361 -
Trre15g03794 371 Pfam Cyclin, C-terminal domain 196 295 IPR004367 -
Trre15g03794 371 Gene3D - 195 285 - -
Trre15g03794 371 FunFam CYCLIN D32 195 285 - -
Trre15g03794 371 CDD CYCLIN_AtCycD-like_rpt2 196 287 - -
Trre15g03794 371 SMART Cyclin_C_2 196 325 IPR004367 -
Trre15g03794 371 SUPERFAMILY Cyclin-like 64 194 IPR036915 -
Trre15g03794 371 CDD CYCLIN_AtCycD-like_rpt1 94 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03794 Trre-Chr15 47273741 47275262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03794 1 361 Core Cell Cycle Gene Families AT5G67260 50.938 8.26e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03794 K14505 - gmx:100785030 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04863 5 50480531 50482050 Trre15g03794 15 47273741 47275262 ECH
Trre15g03794 15 47273741 47275262 Trre15g03794 15 47273741 47275262 ECH