Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03790 ATGGATGATGGTGAATGGGATCTTATGTCCATTGTACGCAGCTGCAAAGCTACCACCGTTACTAATCCTAATAACATATTTGAAATGTCTCCACCTCAAACCCCAATTACCATCACCACTACCAACAACATTATTCCCACTCAAAACACCACACCATCTTACTTTAGCGATTTAACAGTTATCCAAAATAATAACCAAGTCCCTGTTGCCCCACTCAAACCAACCGATTTCATAGATCTAGAGAAATTGAGAATTAATTTCAATAACAACAACACTCTTCCCATCCATACAACAATTCTCCCCAACCCCACCACCTCTTCCCCCATATCTACCACCACTACTCCCATCACATCGGCAACCACCATCCCCACTTACATCACAACTACTCCTTTTGATTGTGAATACAATCATCCATCAGTTTCACAACAACCTCCGAGACAGCACAATCAGCTACCAATTCTACTACCACCCCAAACCCCAATTACCATCACCACCAACAATAACATTATACCCCCTCATAACACCACATTATCTTACTTGAACGATTTTATTGCTATAAGAGAAAACATTATACCTATCCCTCCGTTTGAACCAATCAACTTTATAGATCTAGACAAATTTAGATTCAATTTCAATCACAACAATACACTCCAAATCCCAGCAACATTTATCCCTAACTCCACCACCATCACGACCCCCACCATAATCACAAACCCCACCACTTCTATCCCAACCGTTGTTCCCACCTACACCACAACTGCTCATGTTGATTGTACGTACAACCATCCATCAGTTCCACAGCAACCTCTGAGACTGGACAATGAACTACCCCAAAACCTAATTACCATCACTACCAACAATAACATTATACCTCCTCAAAACACTACACCATCTTACTGGAACGATTTTACTGTTATCCAAAATAATAACTTGGATCATATCCCCTCGTTTAAACCAACAAATTTTATAGATCTAGAGAAGTTTAGGTTCAATTTCAATCACAACAATACTCTCCAAATCCCTACAACAATTATCCCCAACTCGACCACCATCATGACCCCCACCATAATCACAACCTCTACCACATCTATTCCAACAATCATTCCCACCACCACCACCACCACTTTTTCCCCCATTTCCACCACCACTAATCCCACCTCGTCGACTACCACCGTCCTCACCCAGATCCCAACTGCTCATTTTGACTGTGCATACAATCATCCATCAGTTCCACAACAACCCTCAGGACAACATAATCAACTGCCAAATCTACAACCTCGAACTAGTTCCACAACAATCATTCCTACCACCACCACCTTTTCCCCCATCTCCACCACCACTATTCCCACCTCGCCAACTACCACCATCGTCACTCAGATCCCAACTGCTCATTTTGACCGTGCATACAATCATCCATCAGTTCCACAACAACCCTCGGGACAACATAATCAACTGGCAAGTCTACAACCTCAAACTAGTTCTAGGGTTTTACCAAATACATATCCAGGACAACCAAAATACAGATCAAGAAAGAGAAAGAATTATAACCAGGTGACATTGGTGTGCCAAGTGAAGAAGGAGAATCTTTCAGAAGATCAGTGGGTATGGAGAAAATATGGACAAAAATCTATTAAAGGATCTCCACATCCAAGGAGCTACTACAAATGTACCACTTCTAAAGATTGTTCGGCAAGAAAACTAGTAGAAAAAAGCAAGACTATAGAGAACACTTATGTTTTGACATATATTGGAGTACACAATCATGAAAAACCGTTGGTTACTCGGAACTCTAGAAGGTGGAGCTATCTGTCTTCTCAAAGCTCTCAAATGCGTGAGTGA 1839 0.4149 MDDGEWDLMSIVRSCKATTVTNPNNIFEMSPPQTPITITTTNNIIPTQNTTPSYFSDLTVIQNNNQVPVAPLKPTDFIDLEKLRINFNNNNTLPIHTTILPNPTTSSPISTTTTPITSATTIPTYITTTPFDCEYNHPSVSQQPPRQHNQLPILLPPQTPITITTNNNIIPPHNTTLSYLNDFIAIRENIIPIPPFEPINFIDLDKFRFNFNHNNTLQIPATFIPNSTTITTPTIITNPTTSIPTVVPTYTTTAHVDCTYNHPSVPQQPLRLDNELPQNLITITTNNNIIPPQNTTPSYWNDFTVIQNNNLDHIPSFKPTNFIDLEKFRFNFNHNNTLQIPTTIIPNSTTIMTPTIITTSTTSIPTIIPTTTTTTFSPISTTTNPTSSTTTVLTQIPTAHFDCAYNHPSVPQQPSGQHNQLPNLQPRTSSTTIIPTTTTFSPISTTTIPTSPTTTIVTQIPTAHFDRAYNHPSVPQQPSGQHNQLASLQPQTSSRVLPNTYPGQPKYRSRKRKNYNQVTLVCQVKKENLSEDQWVWRKYGQKSIKGSPHPRSYYKCTTSKDCSARKLVEKSKTIENTYVLTYIGVHNHEKPLVTRNSRRWSYLSSQSSQMRE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03790 612 Pfam WRKY DNA -binding domain 531 589 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03790 612 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 604 IPR044810 GO:0003700
Trre15g03790 612 MobiDBLite consensus disorder prediction 468 512 - -
Trre15g03790 612 MobiDBLite consensus disorder prediction 472 500 - -
Trre15g03790 612 Gene3D WRKY domain 515 592 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g03790 612 SUPERFAMILY WRKY DNA-binding domain 525 591 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g03790 612 ProSiteProfiles WRKY domain profile. 525 591 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03790 612 SMART WRKY_cls 530 590 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g03790 612 MobiDBLite consensus disorder prediction 409 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03790 Trre-Chr15 47177039 47180371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03790 508 591 WRKY Transcription Factor Family AT5G52830 58.333 1.19e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g03790 WRKY 6.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03790 - - tpra:123886355 219.55