Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03789 ATGAATAACCGAAAAGACATGGATCGAATCAAAGGTCCATGGAGCCCCGAAGAAGACGAAGCTTTACAGAAACTCGTCGAACGTCACGGCCCTCGTAACTGGTCACTCATCAGTCGTGCTATTCCCGGCCGTTCTGGAAAATCGTGTCGACTCCGTTGGTGTAATCAGCTTTCTCCTCAAGTTGAGCATCGGGCTTTTACTCCTGAAGAAGATAATTTAATTATCAGAGCCCATGCTCAGTTTGGTAATAAATGGGCCACAATAGCCCGATTACTCTCGGGCCGAACTGATAACGCTATCAAAAACCATTGGAATTCAACTCTCAAGCGTAAGTGTTCTTCCTTCATGGCTTCTGATGATCCAGCTTTTGATCCTCAGCCGCTTAAACGTTCTGCTAGCGTCGGTGCTCCAGGGAGTCCTTCTGGATCCGATTTAAGCGATTCTGGTGTTCAAACTGTTTTTCGTCCTGTTCCGATTCGTTTGGAGAAAACAACTACATCGGAACCTGCGGTGGCGGTGGAAGAGGAGGAGGATGACGGTGGTCCGTTAACTTCGCTTTCGCTTTCTCTTCCAGGTGTGGAGAGTTCTTCTTCCGATCAGCATCGATCTGCGTCTGCGGCGGTGGCGATAACTGTGAATCCGATAACGGCTGTAACGGCTTCAGTGGCGGCGAAAGTGGGAGCGTTGAATTTGAGTGGGGAATTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTGAGGAGTTACATGGAAGAGCGTAATGGAATGTGTTTTCAAGGTGTTGATAGGCTTAGGAATGTTTCTGCTAAGCCTATTGGGATTAACAGGGTTGATTCTTAA 843 0.4733 MNNRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDNLIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFMASDDPAFDPQPLKRSASVGAPGSPSGSDLSDSGVQTVFRPVPIRLEKTTTSEPAVAVEEEEDDGGPLTSLSLSLPGVESSSSDQHRSASAAVAITVNPITAVTASVAAKVGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINRVDS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03789 280 CDD SANT 65 108 IPR001005 -
Trre15g03789 280 Pfam Myb-like DNA-binding domain 14 72 - -
Trre15g03789 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 112 IPR017930 -
Trre15g03789 280 PANTHER MYB PROTEIN-RELATED 11 193 - -
Trre15g03789 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Trre15g03789 280 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Trre15g03789 280 Gene3D - 10 62 - -
Trre15g03789 280 Gene3D - 64 126 - -
Trre15g03789 280 MobiDBLite consensus disorder prediction 136 150 - -
Trre15g03789 280 FunFam Transcription factor MYB44 65 111 - -
Trre15g03789 280 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Trre15g03789 280 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Trre15g03789 280 CDD SANT 13 55 IPR001005 -
Trre15g03789 280 SMART sant 62 110 IPR001005 -
Trre15g03789 280 SMART sant 10 59 IPR001005 -
Trre15g03789 280 FunFam MYB transcription factor 11 62 - -
Trre15g03789 280 MobiDBLite consensus disorder prediction 119 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03789 Trre-Chr15 47097869 47098711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03789 4 251 MYB Transcription Factor Family AT4G37260 54.122 5.06e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g03789 Myb_DNA-bind_6 8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03789 K09422 - gmx:100806145 335.88