Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03788 ATGGAAGCAATTTCATACTCAATCCCTTCTACTAAATTCCATTCACTTCATCATATCCACACCAAAACCACAAGAATTCAATCCTCCAATCTCACTTTTCGCCTTCGCCCTTCCCCAATTTCAATCAAACCTTTCTATTCTTCCAAATTCCTAATTCTCCATCACCATAACCTTCGTTGCAACGCTCAATCCACAACCAATCACCACCACCACGACCATAATCACAATCACAACGATCATAACCACAACCATAACCATAATCATAATCATAATCACAATCACAATCACAATCATCATCATCATAATCATTCGCACGACATCGATGAGGCTAATCTCACTGGACCTCAAAGAGCGATTATCAGTTTCGCTAAAGCTACCAAATGGATTGACCTAGCGAATATCCTCAGAGAGCATTTGTATCTTTGTTGCTTCTCAACTGCTTTATTTGTTTCCGCTGCTATTTGCCCTCATGTTTTGCCCAAATCACTCATCAAACCCTTCCAAAATTCGTTCATTCTCGTCGCTTTTCCTTTGGTTGGGATTTCGGCATCACTTGATGCTTTAATTGAAATTAGTAGTGGAAAAGTGAACATCCATGTGTTAATGGCAATGGCAGCTTTTGCATCGATATTTATGGGAAATTCTTTGGAAGGAGGGTTACTTCTTGCAATGTTTAATCTTGCACATATAGCTGAAGAGTATTTTACTAGCCGTTCAATGGTTGATGTTAAAGAGTTGAAGGAGAACAATCCCGAGTTTGCACTTGTTCTTGATACAAAAGACGATAAACTTCCTAATACATTTGATTTGGCATACAAGAGGGTTCCTGTGCATGATATAATTGTAGGATCATATGTCCTTGTTGGTGCCGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCGGTGCCACCATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCTAAAGTTGGAGATAGAGTTCCTGGCGGGGCAAGGAACTTAGATGGGAGAATAATTGTGAAGGTAACAAAGACATGGAAGGAATCAACACTAAGCAAAATTGTGCAGTTGACTGAAGAAGCTCAGTTGAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAAAATTACAGCAAAGTTGTAGTGGTGTTATCAATTGCTATTGCTGTTCTTGGACCACTTGTATTTAAGTGGCCATTCATTAGTACACCAGCTTGCAGAGGTTCTATTTACAGAGCTTTAGGGCTCATGGTTGCAGCATCACCATGTGCGTTAGCCGTGGCTCCATTGGCATATGCCACAGCAATCAGCTCCTGTGCGAAAAAGGGCATACTACTCAAAGGTGGACATGTTCTGGATGCGCTAGCTTCATGCCATACCATTGCATTTGATAAAACAGGGACATTGACTACTGGTGGACTTTTGTTCAAGGCAATTGAGCCCATTTATGGTCATGACATCAGAAATAGGGAATCAATCATTTCTTCCTGCTGCATTCCTACATGTGAAAAGGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCCATTGGAAGGGCTGTGGTTGACCATAGTGAAGGGAAAGACCTCCCTTCTGTTTCTGTTGAAAATTTTGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGAAGGTGCTAAACTATTGAAAGCATCACTTGGGTCTATAGATTTCATCACTTCATTTTGTCAATCTGAAAATGAATCAAAAAAGATCAAGGAAGCTATTAATGCATCTTCATATGGAAGTGAATTTGTTCATGCTGCCCTTTCAATAAATAAAAAGGTAACATTGATTCATCTGGAGGATAGGCCGCGACCAGGGGTTTTTGATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGCGTGATGATGTTAACTGGTGATCATGAATATAGTGCAAAGAGAGTAGCAACTGCTGTGGGCATCAATGAGTTTTATTGCAACCTGAAGCCTGAAGATAAGCTGAGCCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGGGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTCACCGTGCTAGTGCAACTGCTATAGCTGTTGCCGATGTGCTGTTGCTTCGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAATCTCGCCAGACAACTTCACTGATTAAGCAAAACGTGGCTCTGGCATTGTCTAGCATCTTTGTGGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGATAACGGTTCTCTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCCATACGTGCTTTAAATGAACCATCCTGGTCCTGGAAGCATGATATATTACAGTTGATTTCCAAGGCTAAATCTAGACTCCCCTCTCTTAGGACAAATATAACAGGTTCAAGCAGCATTACAACTGCAAATTTGTGA 2517 0.4148 MEAISYSIPSTKFHSLHHIHTKTTRIQSSNLTFRLRPSPISIKPFYSSKFLILHHHNLRCNAQSTTNHHHHDHNHNHNDHNHNHNHNHNHNHNHNHNHHHHNHSHDIDEANLTGPQRAIISFAKATKWIDLANILREHLYLCCFSTALFVSAAICPHVLPKSLIKPFQNSFILVAFPLVGISASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKENNPEFALVLDTKDDKLPNTFDLAYKRVPVHDIIVGSYVLVGAGESVPVDCEVFQGGATITIEHLTGEVKPLEAKVGDRVPGGARNLDGRIIVKVTKTWKESTLSKIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSIAIAVLGPLVFKWPFISTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLLFKAIEPIYGHDIRNRESIISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVENFEYFPGRGLTATVNSIESGTEGAKLLKASLGSIDFITSFCQSENESKKIKEAINASSYGSEFVHAALSINKKVTLIHLEDRPRPGVFDVIQELQDEAKFRVMMLTGDHEYSAKRVATAVGINEFYCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFVASLPSVLGFLPLWITVLLHEGGTLLVCLNSIRALNEPSWSWKHDILQLISKAKSRLPSLRTNITGSSSITTANL 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03788 838 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
Trre15g03788 838 Pfam haloacid dehalogenase-like hydrolase 462 707 - -
Trre15g03788 838 MobiDBLite consensus disorder prediction 64 109 - -
Trre15g03788 838 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 26 836 - -
Trre15g03788 838 PRINTS P-type cation-transporting ATPase superfamily signature 108 122 - -
Trre15g03788 838 PRINTS P-type cation-transporting ATPase superfamily signature 718 730 - -
Trre15g03788 838 PRINTS P-type cation-transporting ATPase superfamily signature 640 650 - -
Trre15g03788 838 PRINTS P-type cation-transporting ATPase superfamily signature 617 628 - -
Trre15g03788 838 PRINTS P-type cation-transporting ATPase superfamily signature 694 713 - -
Trre15g03788 838 SFLD C1.7: P-type atpase like 446 747 - -
Trre15g03788 838 Gene3D - 457 745 IPR023214 -
Trre15g03788 838 Gene3D - 475 625 IPR023299 GO:0000166
Trre15g03788 838 MobiDBLite consensus disorder prediction 70 101 - -
Trre15g03788 838 SUPERFAMILY HAD-like 462 794 IPR036412 -
Trre15g03788 838 SFLD p-type atpase 446 747 IPR044492 -
Trre15g03788 838 SUPERFAMILY Calcium ATPase, transmembrane domain M 200 780 IPR023298 -
Trre15g03788 838 CDD P-type_ATPase_HM 148 796 - -
Trre15g03788 838 NCBIfam HAD-IC family P-type ATPase 594 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g03788 838 NCBIfam HAD-IC family P-type ATPase 224 485 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g03788 838 Gene3D - 236 362 - -
Trre15g03788 838 Pfam E1-E2 ATPase 272 444 - -
Trre15g03788 838 NCBIfam heavy metal translocating P-type ATPase 198 796 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre15g03788 838 SUPERFAMILY Calcium ATPase, transduction domain A 272 357 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03788 Trre-Chr15 47085330 47094715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03788 115 822 Primary Pumps ATPases AT4G37270 76.836 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03788 K01534 - gmx:100776309 1333.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03788 15 47085330 47094715 Trre15g03788 15 47085330 47094715 ECH