LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g03767	ATGATATTACGCAACAAAGAATCGATAAACTCGAACGACACAAGTCTTGATCAAATTGGTACATCTTCTAATAAGGTTCGAGTTTCAGGAAATTCAAGAAAAAACATTGTTGGTGTTACTAAAAGGAAGAATGGAAAGTATGCCGTCAAGGTATACGATCGTATAAGGAAAAAAGATTTGTGGTTAGGGACTTTTGATACGGAAGAAGAAGCTTCAGTTGTGTACTTGTCCAAGAAAACAGAGTTGGAGGAAGAATTGCATGCAAGTGTTATTAAGGCTGTTGGTAAGAGAACCTCAAAATATGTTGGGGTTTGGAGGAGGGACAGTGGGAAATTTGCTGCTCATATTCGAGACCCCATAAGGAAGAAAAAGTTGTACTTGGGTACCTTTGTATCTGAGGAAGAAGCAGCGGAAGCGTATTTGGCTAAGAAAGCTGAATTGGCTGAGGAAGTTAAGGGCAAAGGGATTCGATGGTTTCCGGAACGAGAGTGTAGGAAATCCAAATCCATGTGTTTGAAAATCACCAAGAATGATGAATTGGAGCAATGTATGGAAGACAATGCTATGGATATTGAAGATGATTCAATCGACCCATCACGCACCAATCAAGAACCTTCAAAGGAGAGTGATAGTTCAGATTCTTGTATTGGCGAAACTGCTTCAAGCAATGCTGTTCCTGATAAGAAATTACCAGTTGTTGAACAAACTTCGATGGACTCCGAAGTTTCAAAGGAAAATACACCTATTCAGAAGGATGGAGGGTCTACAGAAAAGGAGTTAATTGTTGTTGAATCAATTGCTGAATCACTGATCAATACAAGTCCACAAATATTGTTGAGAACCAGGTCTGGAACACCTGTTATGGATTCTAATGGATGTTTGTTGGGTGAATGGAGGTGGATCGATGACTTGAGTTTACCTATTGATATGTAG	933	0.3944	MILRNKESINSNDTSLDQIGTSSNKVRVSGNSRKNIVGVTKRKNGKYAVKVYDRIRKKDLWLGTFDTEEEASVVYLSKKTELEEELHASVIKAVGKRTSKYVGVWRRDSGKFAAHIRDPIRKKKLYLGTFVSEEEAAEAYLAKKAELAEEVKGKGIRWFPERECRKSKSMCLKITKNDELEQCMEDNAMDIEDDSIDPSRTNQEPSKESDSSDSCIGETASSNAVPDKKLPVVEQTSMDSEVSKENTPIQKDGGSTEKELIVVESIAESLINTSPQILLRTRSGTPVMDSNGCLLGEWRWIDDLSLPIDM	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g03767	310	SUPERFAMILY	DNA-binding domain	99	148	IPR016177	GO:0003677
	Trre15g03767	310	ProSiteProfiles	AP2/ERF domain profile.	100	160	IPR001471	GO:0003700\|GO:0006355
	Trre15g03767	310	SMART	rav1_2	100	166	IPR001471	GO:0003700\|GO:0006355
	Trre15g03767	310	SMART	rav1_2	35	89	IPR001471	GO:0003700\|GO:0006355
	Trre15g03767	310	MobiDBLite	consensus disorder prediction	193	207	-	-
	Trre15g03767	310	ProSiteProfiles	AP2/ERF domain profile.	35	94	IPR001471	GO:0003700\|GO:0006355
	Trre15g03767	310	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	99	232	-	-
	Trre15g03767	310	CDD	AP2	34	75	IPR001471	GO:0003700\|GO:0006355
	Trre15g03767	310	Gene3D	AP2/ERF domain	99	150	IPR036955	GO:0003700\|GO:0006355
	Trre15g03767	310	Gene3D	AP2/ERF domain	37	85	IPR036955	GO:0003700\|GO:0006355
	Trre15g03767	310	MobiDBLite	consensus disorder prediction	236	250	-	-
	Trre15g03767	310	SUPERFAMILY	DNA-binding domain	37	82	IPR016177	GO:0003677
	Trre15g03767	310	MobiDBLite	consensus disorder prediction	189	255	-	-
	Trre15g03767	310	MobiDBLite	consensus disorder prediction	1	28	-	-
	Trre15g03767	310	Pfam	AP2 domain	99	141	IPR001471	GO:0003700\|GO:0006355
	Trre15g03767	310	Pfam	AP2 domain	35	71	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g03767	Trre-Chr15	46845839	46846771	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g03767	21	86	AP2-EREBP Transcription Factor Family	AT1G49120	37.879	1.24e-06	47.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Trre15g03767		AP2	1.2e-06	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g03767	-		-	nto:104089342	107.842