Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03761 ATGTATCAGAAGAAAATCGCTATGGCTACGCCCTCCGCCACAATGCAGTGGCCAGCTCAGTGGTCTCGTGAAGACGTCAAGATTTTCGAGAGAGCTCTTGTGATGGTGCCGGAGGATTTACCTAACCGATGGGAGAAAATTGCCGAACAAGTTCCCGGTAAGTCGGCAGCGGAAGTGAGGGATCACTATGAGAATTTGGTTCATCAAATTTTGGAAATTGAATCTGGTCTGGTTGAGGTTCCAAATTATCCTGATGACTTGGTTTTGAGTGGTGGCAGTGGATCCTCTGATTCGGATTCTTCAAAGAAGACTAGACATGACAAGGAGAAGAGGAAGACGAAGAAAGGAAGATCACAGACCGAAGATGAACATAGGCGGTTTCTTGCTGGACTTGAGAAATACGGGAAAGGAGATTGGAGAAGCATTTCAAAAAATTTTGTTGTGATGAAAACACCAACTAAGGTAGCAAGCCATGCTCAGAAATACTTTAATCACAAGCAGCGAAAGAGTGAAGCGGAGAATAAAAAAAGGACAAGAACAATCATTCATGACATTACACTGGGAGATAGTAACTCAGCTCCGGTGCCTATTGATCAAAACCGTGTTCCTCCTCTCGGTGTTGGTTCATTGCAACAGCCCCAAAGAATGCATTATTATCCCTCACTTCCACCAAGTGATCAACCGTAG 687 0.444 MYQKKIAMATPSATMQWPAQWSREDVKIFERALVMVPEDLPNRWEKIAEQVPGKSAAEVRDHYENLVHQILEIESGLVEVPNYPDDLVLSGGSGSSDSDSSKKTRHDKEKRKTKKGRSQTEDEHRRFLAGLEKYGKGDWRSISKNFVVMKTPTKVASHAQKYFNHKQRKSEAENKKRTRTIIHDITLGDSNSAPVPIDQNRVPPLGVGSLQQPQRMHYYPSLPPSDQP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03761 228 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Trre15g03761 228 NCBIfam myb-like DNA-binding domain, SHAQKYF class 115 166 IPR006447 GO:0003677
Trre15g03761 228 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 204 IPR043363 -
Trre15g03761 228 CDD SANT 21 67 IPR001005 -
Trre15g03761 228 Gene3D - 19 69 - -
Trre15g03761 228 SUPERFAMILY Homeodomain-like 120 167 IPR009057 -
Trre15g03761 228 FunFam transcription factor MYB1R1 118 168 - -
Trre15g03761 228 CDD SANT 120 163 IPR001005 -
Trre15g03761 228 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Trre15g03761 228 MobiDBLite consensus disorder prediction 186 228 - -
Trre15g03761 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 167 IPR017930 -
Trre15g03761 228 Gene3D - 119 168 - -
Trre15g03761 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 71 IPR017930 -
Trre15g03761 228 FunFam Transcription factor SRM1 13 80 - -
Trre15g03761 228 SMART sant 17 69 IPR001005 -
Trre15g03761 228 SMART sant 115 165 IPR001005 -
Trre15g03761 228 MobiDBLite consensus disorder prediction 88 124 - -
Trre15g03761 228 Pfam Myb-like DNA-binding domain 20 66 IPR001005 -
Trre15g03761 228 Pfam Myb-like DNA-binding domain 120 163 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03761 Trre-Chr15 46824639 46827312 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g03761 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03761 - - tpra:123883408 237.269