Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03754 ATGATCTGCAAATACAATGATAAAGCCTCAAGCAATAAACAAAACCTTGATGATGAACCACAAAACAATATTAACATAGGAGAATGGTTGAGTTTAGGAACCAAACAAGACATGTCTATGAAAATAGCTCATCAAAACCAAAATGCTCAATCATCAAAACCTCTTCACAAAAAGGCATACTCATGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTAGGGGGACACCAAAATGCACACAAAAGGGAAAGAGAAGCAGCTAGAAAATTCAAATTATCTCATAATTCTTTGGTAGCAAGGTCACTAGGAATCCAGACTCACTCTCTTGTGCACAAACAAAGCAGAGAAAGAGCTGCTACTATGGTGGCTCAATTCAATGTTAATGATGCAAGTTCTAGAATTGGAATGGCATGGACACCCCCCCTTGTTCTTGAACATGGTGTTGATTTTGTATGGCATGGAAGCTTTCGAATGGACTTGCCAAAGCAAGAATCAGATATACATAATAAGCTGGACTTAGATCTTAGGCTTTGA 540 0.3815 MICKYNDKASSNKQNLDDEPQNNINIGEWLSLGTKQDMSMKIAHQNQNAQSSKPLHKKAYSCNFCMRKFYSSQALGGHQNAHKREREAARKFKLSHNSLVARSLGIQTHSLVHKQSRERAATMVAQFNVNDASSRIGMAWTPPLVLEHGVDFVWHGSFRMDLPKQESDIHNKLDLDLRL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03754 179 Gene3D Classic Zinc Finger 33 122 - -
Trre15g03754 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Trre15g03754 179 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Trre15g03754 179 PANTHER ZINC FINGER PROTEIN 4-LIKE 10 179 - -
Trre15g03754 179 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g03754 179 MobiDBLite consensus disorder prediction 7 22 - -
Trre15g03754 179 SUPERFAMILY beta-beta-alpha zinc fingers 56 87 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03754 Trre-Chr15 46655842 46656381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03754 46 169 C2H2 Transcription Factor Family AT1G24625 37.226 1.05e-19 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03754 15 46655842 46656381 Trre15g03754 15 46655842 46656381 ECH