Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03753 ATGTATCCAAACCCACAAGAACAATCACTTCCACTATTAGTGGAACGCCAAGAAGATGAAGAGCTTCAAGAAACAGCTTATGATTCATCTGAAAAGATTGTTGTAGTTGGAATTGACGAATCAACAAACTGGGGTACCTCAGTTCCACCATTTTCATGGAAAAAGCTATGGAGATTCACAGGTCCTGGTTTTCTAATGAGCATAGCTTTTTTGGATCCAGGGAATTTAGAAGGAGACCTTCAAGCTGGTGCCATTGCTGGGTATTCTTTGTTATGGCTTCTTATGTGGGCTACAGCAATGGGGCTTTTGATTCAGCTTTTGGCAGCTAGACTTGGTGTTGCTACAGGGAAACATTTGGCTGAGCTTTGTAGGGAGGAGTATCCTAGATGGGCTAGGAATGTGCTTTGGGTTATGGCTGAGTTTGCTCTTATTGGTTCTGATATACAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTCTTAGTAATGGGGTTGTTCCTCTTTGGGGTGGTGTTATCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGATCATTGGAAGCTTTTTTTGCTGTTCTCATTGGCATAATGGCAGTAGCTTTTGGTTGGATGTTTAGTGAGGCAAAGCCAAGTGGCAAGGAACTTCTAGTTGGCATTCTTGTTCCAAAACTCAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGCTGTCTTATAATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGGCAAGTTGATCACAGCAACAAAGGCCGAGTTCAAGAAGCGCTTAATTATTTCTCAATAGAGTCTACGCTTGCCTTGATAGTCTCCTTTATCATCAACATATTTGTCACAGCTGTGTTTGCTAAAGGATTTTATGGTAAAGAAACGGCAAATAGTATTGGCCTTGTAAATGCGGGACAGTATCTTCAGGATACTTATGGAGGTGGAATGTTTCCGATATTGTACATATGGGGTATTGGATTGTTAGCAGCTGGTCAAAGTAGCACTATAACCGGTACTTATGCTGGACAATTTATCATGGGAGGTTTTCTAAATTTAAGGTTGAAGAAATGGATAAGGGCGTTGATTACTCGAAGTTTTGCAATAGTCCCAACTATGATAGTTGCTCTTATATTTGATGCTACAGAGGATTCACTAGATGTTCTGAATGAGTGGCTTAATGTTCTTCAGTCGGTACAAATCCCCTTTGCACTTATTCCTTTGCTTTGTTTGGTATCAAAGGAACAGATAATGGGAACTTTCAAAATTGGCACTGTCCTCAAGATTATTTCTTGGTCTGTGGCTGCTCTTGTGACAGTGATCAATGGCTATCTTTTGATGGAATTCTTCTCAGCTGAAGTGAATGGAATAATGGTTGGAGCTATAGTGTGTATAGTAACTGCTGCATATGTTGCATTCATAATATATCTTATTTTGAGGGCTACTAGGAAGTAA 1497 0.3988 MYPNPQEQSLPLLVERQEDEELQETAYDSSEKIVVVGIDESTNWGTSVPPFSWKKLWRFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLAARLGVATGKHLAELCREEYPRWARNVLWVMAEFALIGSDIQEVIGSAIAIRILSNGVVPLWGGVIITALDCFIFLFLENYGVRSLEAFFAVLIGIMAVAFGWMFSEAKPSGKELLVGILVPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDHSNKGRVQEALNYFSIESTLALIVSFIINIFVTAVFAKGFYGKETANSIGLVNAGQYLQDTYGGGMFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSFAIVPTMIVALIFDATEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGTVLKIISWSVAALVTVINGYLLMEFFSAEVNGIMVGAIVCIVTAAYVAFIIYLILRATRK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03753 498 Pfam Natural resistance-associated macrophage protein 77 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PRINTS Natural resistance-associated macrophage protein signature 135 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 Hamap Divalent metal cation transporter MntH [mntH]. 41 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 48 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre15g03753 498 NCBIfam Nramp family divalent metal transporter 61 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03753 Trre-Chr15 46648691 46651412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03753 49 494 Inorganic Solute Cotransporters AT2G23150 80.493 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03753 K21398 - gmx:100812381 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03753 15 46648691 46651412 Trre15g03753 15 46648691 46651412 ECH
Trre9g00781 9 5935080 5938224 Trre15g03753 15 46648691 46651412 PCT