Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03735 ATGCGCACGAATCTCCAGCAAGCACAACTCCTCCGCTTGTTGCTAGTGTGCACCCTCATTACCTTACGTGCGCCGGTTGCGCAACCCCCTAACCTGCGCACACCCACCCAATCCATCGAATCTAATACTACCACCACTATCGTTTATCATCACCACCACCACAATTCTCAGATCTCAAATTTCAATCTCCATTCAATGTCCAAAGCTCGCGTTTATACCGATGTCAATGTTATTCGTCCCAAAGAGTATTGGGATTATGAATCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTACGAAAAGTGGGAAGGGGGAAATATAGTGAGGTGTTTGAAGGCATAAATGTTAACAGCAATGAGCGCTGTGTTATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTCCAGAACCTTTGTGGGGGGCCAAATATTGTCAAGCTTCTTGATATTGTCAGGGATCAGCACTCTAAAACTCCAAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACATTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGATTACTGCCATTCCCAAGGCATAATGCATAGAGATGTCAAACCACACAATGTTATGATTGATCATGAGTTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAGTTTTATCATCCTGGAAAGGAATATAATGTCCGTGTGGCTTCAAGATACTTTAAGGGCCCCGAACTTCTAGTTGATTTGCAAGACTATGATTACTCATTAGACATGTGGAGCCTTGGTTGCATGTTTGCCGGAATGATATTTCGCAAGGAACCATTCTTTTACGGTCATGACAACCACGACCAGCTCGTTAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAATAAGTATCATCTTGAGCTAGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAACCTTGGTCTAAATTCATCAATCCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGGTATGACCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACTCAGTAA 1197 0.4202 MRTNLQQAQLLRLLLVCTLITLRAPVAQPPNLRTPTQSIESNTTTTIVYHHHHHNSQISNFNLHSMSKARVYTDVNVIRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03735 398 Pfam Protein kinase domain 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03735 398 Gene3D Transferase(Phosphotransferase) domain 1 176 384 - -
Trre15g03735 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Trre15g03735 398 CDD STKc_CK2_alpha 80 384 IPR045216 GO:0004674|GO:0006468
Trre15g03735 398 Gene3D Phosphorylase Kinase; domain 1 99 175 - -
Trre15g03735 398 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Trre15g03735 398 SMART serkin_6 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03735 398 SUPERFAMILY Protein kinase-like (PK-like) 70 388 IPR011009 -
Trre15g03735 398 ProSiteProfiles Protein kinase domain profile. 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03735 398 FunFam Casein kinase II subunit alpha 85 175 - -
Trre15g03735 398 FunFam Casein kinase II subunit alpha 176 387 - -
Trre15g03735 398 PANTHER CASEIN KINASE II SUBUNIT ALPHA 42 394 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03735 Trre-Chr15 46413677 46419584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03735 97 384 Core Cell Cycle Gene Families AT1G76540 29.450 1.89e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Trre15g03735 Pkinase 4.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03735 K03097 - gmx:100820471 707.597