Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03718 ATGACGCAATTCACACCTTCACTACCTTATTTGCACCAAACAACAACAACAACCTTTTCAAACCCTTCTTCTTCTTCCATGAACAAAAACAATCAAATACCAACTAAACCATGGTTCCCAACATCCAAAGCTTTAACTACCTTTGGTGACACAAATTGCATGGAACAGTTACTTGTTCATTGCGCAAACGCAATCGAAACAAACGATGTAACACTTGCTCAACAAATCCTTTGGGTTCTTAACAATATAGCACCACAAGATGGCGATTCAAATCAGCGCTTAGCTTATAGTTTCCTAAGAGCTCTCACAAATCGCGCAGCGAAAACCGGTACCTGCAAAATGCTAGTAGAACAAGTTTATTCAAATGCTCATAACAATCTTACCATAGAAACTCACAGATTCTCAGTCATTGAACTAGCTAATTTTGTCGATTTAACACCTTGGCATCGATTCGGTTATGCAGCTGCTAATGCAGCCATTCTTGAAGCAACAGAAGGTTTTTCAGTGATTCATATTGTTGATTTAAGTTCAACTCATTGCATGCAGATTCCTACATTAATTGATGCTATCGCGAATCGCCATGAAGTTCCTCCTTTAATCAAACTCACAGTTTCTGATCATGATAATAACATTGATCAAATTCCACCTAAACTTGATCTTTCTTATCAAGAATTAGGTTCTAAGTTGGTTAATTTCGCTAGGTCGAGAAACGTGACATTAGAATTCAGAGTAGTTTCTTCGAGTTACACAAACGGTTTCGCTTCTTTGATCGAACATTTAAGAGTTCAACGTATGGTTTATTCAGGTGAAGCTTTGGTTATAAATTGCCACATGATGCTTCATTATATTCCAGATGAAACCCTATCAAATTCAAACTCTTATGTTTATGAGTCTATGTCTTCTTCTGTTTCTACTACTACTACTGCTGCTTCTCTCAGATCATTGTTCCTTACCGCACTTCGCGGTTTAGATCCAACACTTGTTATATTAGTAGATGAAGATGTTGATTTAACTTCAAATAACTTGGTTAGTAGATTAAGGTCTGCATTTAATTATCTATGGATACCTTATGATACTGTGGACACATTTCTGCCACGTGGAAGTAAACAAAGACAATGGTATGAAGCAGATATTTGTTGGAAGATTGAAAATGTGATAGCTCATGAAGGTGTTCAAAGAGTTGAGAGAGTTGAACCTATTGGAAAATGGGAACAAAGAATGAGAAATGCAAATTTTCAAGGGATTGGATTTGGTGAAGAATGTGTTGGTGAAGTGAAAGCTATGCTTGATGAACATGCTGCTGGTTGGGGATTGAAGAAAGAAGATGAATGTATTGTGCTTACTTGGAAAGGGCATAATGTTGTTTTTGCTTCTGCTTGGTTACCTGCTTAA 1392 0.37 MTQFTPSLPYLHQTTTTTFSNPSSSSMNKNNQIPTKPWFPTSKALTTFGDTNCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPQDGDSNQRLAYSFLRALTNRAAKTGTCKMLVEQVYSNAHNNLTIETHRFSVIELANFVDLTPWHRFGYAAANAAILEATEGFSVIHIVDLSSTHCMQIPTLIDAIANRHEVPPLIKLTVSDHDNNIDQIPPKLDLSYQELGSKLVNFARSRNVTLEFRVVSSSYTNGFASLIEHLRVQRMVYSGEALVINCHMMLHYIPDETLSNSNSYVYESMSSSVSTTTTAASLRSLFLTALRGLDPTLVILVDEDVDLTSNNLVSRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVQRVERVEPIGKWEQRMRNANFQGIGFGEECVGEVKAMLDEHAAGWGLKKEDECIVLTWKGHNVVFASAWLPA 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03718 463 Pfam GRAS domain family 54 460 IPR005202 -
Trre15g03718 463 MobiDBLite consensus disorder prediction 15 37 - -
Trre15g03718 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 450 IPR005202 -
Trre15g03718 463 ProSiteProfiles GRAS family profile. 45 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03718 Trre-Chr15 46169391 46170782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03718 34 462 GRAS Transcription Factor Family AT3G49950 57.506 4.90e-174 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre15g03718 GRAS 3e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03718 - - cam:101509453 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03718 15 46169391 46170782 Trre15g03718 15 46169391 46170782 ECH