Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03715 ATGAGTTGCAATGGTTGCCGAGTTCTTCGCAAAGGTTGTAGCGAAACATGTATTCTACGACCTTGTTTGCAATGGATCGAAACACCAGAAGCTCAAGGTCACGCTACTGTTTTCGTAGCTAAATTCTTCGGTCGTGCTGGTCTCATGTCTTTCATTTCCAATGTTCCTGAACCACAAAGACCAGCTCTGTTTCAGTCTCTATTGTTTGAAGCGTGTGGAAGAACCGTTAACCCTGTGAACGGTGCGGTGGGACTTTTATGGACTGGAAACTGGCACGTGTGTCAGGCAGCGGTTGAGACTGTTCTTCGCGGCGGTGTTCTTAGGCCTTTACCGGAGCTGACACTCATGGACGCGCCGCCTGTTGCTGCTGATGAAGCCTCTGAGGCGGAGGACGGTGGTGCAGACGCCATTTGGAGGATCCGAGATCCGAATCTGAGTTTCCGGTTCACAAGCTCGCGATCTAGTAATAAAGTCTCTTCTGGTGTTAAACGCCGACGATCGGAGGAGTCTGTGAAAGTTCCGGCGGCAACTAATCTTGATCTCAGGCTGACACCGATTTTCCTGCAGAAAGAGATGGAGAATCGCAGGCCGGGTTCGCCGTCGATGAATTCTGAGGAATCTGTCACAACAACGGCGTGTTTGGAGACTGGGATTGCAGATCGCTTGTCTCACGGTGGTGATCGGAAAGTTCTCAACCTTTTCATATGA 708 0.5042 MSCNGCRVLRKGCSETCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGVLRPLPELTLMDAPPVAADEASEAEDGGADAIWRIRDPNLSFRFTSSRSSNKVSSGVKRRRSEESVKVPAATNLDLRLTPIFLQKEMENRRPGSPSMNSEESVTTTACLETGIADRLSHGGDRKVLNLFI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03715 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Trre15g03715 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 216 - -
Trre15g03715 235 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03715 Trre-Chr15 46071147 46071961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03715 1 235 AS2 family AT4G37540 57.540 4.46e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g03715 LOB 8.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03715 - - gmx:100802764 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00756 9 5710845 5711786 Trre15g03715 15 46071147 46071961 ECH
Trre15g03715 15 46071147 46071961 Trre15g03715 15 46071147 46071961 ECH
Trre15g03715 15 46071147 46071961 Trre9g00756 9 5710845 5711786 PCT