Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03696 ATGTTCTCCATTGTAGCTTTCTTCTTGTTTAAGCATAGAATGAAACACTCGTCGGAATCAGATAAACGGAAATTCGTCGGTGAGAATTTGAATAGAGTTCTAGAAGATTCCACGCGGGTTCCGCCACTACCACAATCATCATCATCGACAAATTTCCTCTACATTGGAACTGTGGTAGAGCCTAACGGTACGCCGGTAGGTGTGACTAACCCTCACAAGGTTAACCGTTACCGTCCGAGTCCCGAGTTGCATCCATTGCCGCCGCTTACGAAGTCTCTCGTCGTAGATAGTCAATCTCCACCGGCGGCGTCTTCGTCGTCGTCATCATCGGATAACGATGAAAGTCGCGACACGGCATTTCATTCGCCGGAAGAGTCTTCCTCACTCAATCTCAGCCGTGAAGACAATTTTTACACGCCGGTTTCCCGTCAAAGTTCTCTCGCAAACGGAAGTCCAAGCGCGCAGGTTACGGTAGCTCCGGTGGTTCCTTTTTCAAAGAGAACTTCGCCGAAATCTCGATTTTCTAGTTCTTCGCCGGTGATGATACCATCGATAAGTAGTGGTAGTGGTTCTTCTAGAAGGCCGAAATTCTCATCACCGCCACCGGCGCCGAATTTGACGCATCTTCATTCAAATGACTCCATAGCTTCACTTAACCTTCCTCCTCCGCCACCACCTCCGCCATTACCGAGAAATGGTTGGTTGCCGGCAGTTAGTGCACCATCATCCTCTGTTTCAAGGAAGCATCAACGGTCTCATTCTTCAATTCATGAAGCAGATTCTGCATCTGGTAACAGTTTGAATGTTAAGAAAGCTTTGAAAGAAGATGATGAAATAGAATTTGATGAAGGAAATGGAAAACCTAAATTGAAAGCTCTTCATTGGGATAAAGTTCGTGCTACTTCAGATCGTGCTACTGTATGGGACCAATTAAAATCAAGCTCATTTCAGTTAAATGAGGACATGATGGAGACACTGTTTGGTTGTAATTCATCAAATATTCCACCTAAAGCTAAAGAGATGTCTGTTACCAGGAAACCAGTTTTTGCTACTGTTGAACATGAGAATAGGGTGTTAGATCCTAAGAAATCACAAAATATAGCTATATTACTCAGGGCATTGAATGTCACAAGAGATGAGGTTTCTGAAGCTCTTTTAGATGGGAATCCTGCAGGTTTGGGTGCTGAGTTATTTGAAACTCTAGTGAAGATGGCTCCTACAAAGGAGGAGGAGATAAAACTAAAAAATTATGATGGTGACCTTTCAAAACTTGGTCCTGCAGAAAGATTTCTTAAGCAAGTGCTTGATATCCCTTTAGCTTTTAAAAGAGTTGAAGCCATGTTGTACAGAGCTAATTTTGAAACAGAAGTTAACTACCTTACGAAATCCTTTCAATCCCTCGAGGCAGCAAGTGAGGAATTAAAGAACAGCCGCTTATTCCTCAAACTCCTTGAAGCTGTTCTCATGACAGGTAACAGAATGAATGTTGGAACCAATCGCGGCGGTGCTAAATCTTTCAAACTGGACACACTCTTGAAACTTGCAGATATAAAAGGAACAGATGGAAAGACAACATTGCTCCATTTTGTTGTGCAAGAGATTATTAGATCTGAAGGCACGGGTGCTGAATCCACAAATGAGAATGTTCAAAACCAAACAAATCCACAGTTCAATGAGGATGAGTTCAGAAAGAAAGGATTACAGGTTGTGGCTGGATTGAGTAGAGACTTTGGTAATGTAAAAAAGGCGGCAGGAATGGACTCGGATGTCTTAAGCAGCTATGTTATAAAACTTGAAATGGGGCTTGATAAAGTGAGATTGGTTTTGCAATATGTAAAACCAGATATGCAAGGAAATTTCTTTAACTCAACAGAGACATTTTTGAAAGATGCTGAAGAGAAAATATTAAAGATCAAGGCTGATGAGATAAGGGCCTTATTCCTTGTGAAAGAAGTTACAGAATACTTTCATGGAGATACAACAAAGGAAGAAGCTCACCCTTTCAGAATTTTTATGATTGTAAGAGACTTTCTAAATATTTTGGATCAAGTATGCAAAGAAGTGGGAAGAATGCAGGATAGAACTTCAATCGGTTCAGCCAGATCGTTCAGAATAGCCGCAAATGCATCGTTACCTGTTCTCAACAGGTACCGTGCAAGACAAGATACAAGTTCAGATGACGAAAGTTTATCCCCCTAG 2199 0.4175 MFSIVAFFLFKHRMKHSSESDKRKFVGENLNRVLEDSTRVPPLPQSSSSTNFLYIGTVVEPNGTPVGVTNPHKVNRYRPSPELHPLPPLTKSLVVDSQSPPAASSSSSSSDNDESRDTAFHSPEESSSLNLSREDNFYTPVSRQSSLANGSPSAQVTVAPVVPFSKRTSPKSRFSSSSPVMIPSISSGSGSSRRPKFSSPPPAPNLTHLHSNDSIASLNLPPPPPPPPLPRNGWLPAVSAPSSSVSRKHQRSHSSIHEADSASGNSLNVKKALKEDDEIEFDEGNGKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGCNSSNIPPKAKEMSVTRKPVFATVEHENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPAGLGAELFETLVKMAPTKEEEIKLKNYDGDLSKLGPAERFLKQVLDIPLAFKRVEAMLYRANFETEVNYLTKSFQSLEAASEELKNSRLFLKLLEAVLMTGNRMNVGTNRGGAKSFKLDTLLKLADIKGTDGKTTLLHFVVQEIIRSEGTGAESTNENVQNQTNPQFNEDEFRKKGLQVVAGLSRDFGNVKKAAGMDSDVLSSYVIKLEMGLDKVRLVLQYVKPDMQGNFFNSTETFLKDAEEKILKIKADEIRALFLVKEVTEYFHGDTTKEEAHPFRIFMIVRDFLNILDQVCKEVGRMQDRTSIGSARSFRIAANASLPVLNRYRARQDTSSDDESLSP 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03696 732 SMART it6_source 280 696 IPR015425 -
Trre15g03696 732 Pfam Formin Homology 2 Domain 285 681 IPR015425 -
Trre15g03696 732 PANTHER FORMIN-RELATED 2 726 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre15g03696 732 MobiDBLite consensus disorder prediction 218 234 - -
Trre15g03696 732 MobiDBLite consensus disorder prediction 166 267 - -
Trre15g03696 732 SUPERFAMILY Formin homology 2 domain (FH2 domain) 221 694 - -
Trre15g03696 732 ProSiteProfiles Formin homology-2 (FH2) domain profile. 280 707 IPR015425 -
Trre15g03696 732 MobiDBLite consensus disorder prediction 92 113 - -
Trre15g03696 732 MobiDBLite consensus disorder prediction 168 196 - -
Trre15g03696 732 MobiDBLite consensus disorder prediction 61 133 - -
Trre15g03696 732 Gene3D Formin, FH2 domain 288 708 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03696 Trre-Chr15 45660185 45663722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03696 255 722 FH2 protein (formin) Gene Family AT5G67470 69.851 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03696 - - gmx:100803578 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03696 15 45660185 45663722 Trre15g03696 15 45660185 45663722 ECH
Trre9g00747 9 5562806 5566995 Trre15g03696 15 45660185 45663722 PCT