Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre15g03692 | ATGGAGAGTTATTTAAATGAGAATTTTGGAGGTGTAAAGTCCAAGAATTCTACCGAAGAAGCTCTTGGAAAATGGAGGAAACTATGTGGGGTTGTAAAGAATCCCAAAAGACGATTTCGTTTCACTGCCAATATTTCCAAACGTTACGAAGCTGCTGCTATGCGTCGCACAAATCAGGAGAAGCTAAGGGTTGCTGTCTTGGTTTCCAAAGCCGCATTTCAATTTATACAAGGCAAGTTTCATCAGAATTGTGTTCAACCAAGCGACTACGTTGTACCTGAGGATGTTAAAGCTGCAGGTTTCCAAATCTGTGCTGATGAATTGGGGTCTATTGTCGAAGGCCATGATGTAAAGAAGCTCAAATTTCATGGTGGAGTTGATGGCATTGCAGAAAAGCTTTCGACATCAACCACTAATGGACTAGGTGGCGATTCTGAATCGCGGCATAGGAGACAAGAGCTTTTTGGCATCAATAAATTTGCAGAAACTGAAATTCGAAGTTTCTGGGTTTATGTTTATGAAGCTCTTCAAGACATGACACTGATGATCCTTGGAGTGTGTGCTTTTGTGTCACTGATAGTAGGCGTGTTAACCGAAGGATGGCCGAAAGGAGCTCATGATGGTCTTGGAATAGTTGCAAGTATCTTACTTGTTGTCTTTGTGACAGCAACGAGTGATTATCGACAATCGTTACAGTTTAAGGATTTAGACAAGGAGAAGAAAAAGATTTCCATTCAAGTTACGAGAAACGGTTATAGACAGAAAATGTCGATATACAATTTACTTCCTGGCGATATTGTCCATCTTAACATTGGAGATCAAGTGCCTGCAGATGGATTATTTGTTTCAGGATTTTCGGTATTGATCGATGAGTCGAGTTTAACAGGTGAGAGTGAGCCAATAATGGTGACTTCACAAAATCCATTTCTTCTCTCAGGAACAAAAGTCCAAGATGGATCATGCACCATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGTAAATTGATGGCAACTCTTAGTGAAGGTGGAGACGATGAAACGCCGTTGCAGGTGAAACTAAATGGAGTTGCAACGATTATTGGGAAAATAGGACTAGTCTTTGCAATTATTACTTTTACAGTTTTGGTTAAAGGACACTTGGGCCGCAAAATCCGCGAAGGAAGATTCTGGAGATGGTCTGGTGATGATGCAATGGAGATGTTGGAATTCTTCGCTATTGCGGTTACTATTGTTGTCGTTGCGGTTCCGGAGGGGTTACCTTTAGCTGTGACATTGAGTCTTGCATTTGCAATGAAGAAGATGATGAATGATAAAGCCTTGGTTAGGCATTTAGCAGCTTGTGAAACTATGGGATCAGCCACAACTATATGTAGTGACAAGACCGGTACATTAACAACCAACCGAATGACGGTTGTGAAAACATGCATTTGTATGAATAGCAAAGAAGTGAACAATAATGATTCAAGTTTGTCGTCCGAACTACCAGATTCTGCTGCAAAACTGTTACTACAGTCGATATTTAATAACACGGGAGGAGAGGTTGTGTATAACAGAAAAGGTAAACGCGAGATATTAGGGACGCCGACCGAATCAGCAATATTGGAATTTGGTTTGTCACTAGGTGGTGACTCTAAGGCTGAGAGAAAAGCTTGCAAAATTGTTAAAGTTGAGCCATTCAACTCTGAGAAAAAACGAATGGGAGTAGTTGTGGAGCTACCTGATGGAGGTTTAAGAGCTCATTGCAAAGGTGCTTCTGAAATAATTCTTGCTGCTTGTGACAAGGTTATTGGCTCGAACGGCGATGTTGTTGCTCTTGATGGAGAATCAATTAATTATCTTAACAGTATTATTAACCAGTTTGCTAATGAAGCACTTAGAACTCTTTGTCTTGCTTATATGGAATTGGAAAACGGATTTTCTGCCGAGGAACCTATTCCTTCTTCTGGATATACTTGTATTGGAATTGTCGGCATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCGGTTGCCGTGTGTCGTTCAGCTGGAATTGTGGTGAGAATGGTTACAGGAGACAATATTAATACTGCAAAGGCTATAGCTAGGGAGTGTGGAATTTTAACAGATGATGGCATAGCTATCGAAGGTCCTGACTTCAGAGAGAAGACTCAGGAGGAAATGTTTGAACTTATTCCCAAAATTCAGGTTATGGCTAGATCATCACCTTTAGACAAACATACATTGGTGAAACAGCTGCGTACAACATTCGGAGAAGTTGTAGCCGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCCGACATCGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTTATAATTCTGGATGATAATTTCTCCACAATAGTGACAGTGGCGAGATGGGGACGTTCGGTTTACATCAATATCCAGAAATTCGTACAGTTTCAGCTTACTGTAAATGTGGTTGCATTACTGGTGAACTTCTCATCAGCTTGCATGACAGGAAGCGCACCACTGACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACTCTGGGAGCGCTTGCACTTGCGACCGAACCTCCAACAGATGATTTGATGAAGCGTGAACCGGTGGGAAGGAAAGGCGATTTCATCAGCAATGTCATGTGGAGGAATATCTTAGGACAAGCATTATATCAGTTTGTGGTAATATGGTTTCTTCAGTCAGTAGGAAAATGGGTCTTTTTCCTAAGGGGTCCCAATGCTGATGTAGTCTTAAACACACTCATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAATGAGATAAACTCTCGCGAGATGGAGGAAATAGACGTTTTTAAAGGCATATGGGATAATCATGTATTTGTGGCGGTCATCGGTGCAACTGTAGTCTTCCAAATCATAATAGTCGAGTACCTCGGAACCTTTGCAAATACAACACCTCTATCTCTGGTACAATGGATATTTTGCATAGGGGTTGGATATATGGGCCTGCCAATCGCAGTTCACTTAAAGCAGATACCAGTATGA | 3063 | 0.4153 | MESYLNENFGGVKSKNSTEEALGKWRKLCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGKFHQNCVQPSDYVVPEDVKAAGFQICADELGSIVEGHDVKKLKFHGGVDGIAEKLSTSTTNGLGGDSESRHRRQELFGINKFAETEIRSFWVYVYEALQDMTLMILGVCAFVSLIVGVLTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDIVHLNIGDQVPADGLFVSGFSVLIDESSLTGESEPIMVTSQNPFLLSGTKVQDGSCTMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLVFAIITFTVLVKGHLGRKIREGRFWRWSGDDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNNNDSSLSSELPDSAAKLLLQSIFNNTGGEVVYNRKGKREILGTPTESAILEFGLSLGGDSKAERKACKIVKVEPFNSEKKRMGVVVELPDGGLRAHCKGASEIILAACDKVIGSNGDVVALDGESINYLNSIINQFANEALRTLCLAYMELENGFSAEEPIPSSGYTCIGIVGIKDPVRPGVKESVAVCRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVARWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKREPVGRKGDFISNVMWRNILGQALYQFVVIWFLQSVGKWVFFLRGPNADVVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGIWDNHVFVAVIGATVVFQIIIVEYLGTFANTTPLSLVQWIFCIGVGYMGLPIAVHLKQIPV | 1020 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre15g03692 | 1020 | PANTHER | CATION TRANSPORTING ATPASE | 72 | 1019 | - | - | |
| Trre15g03692 | 1020 | Gene3D | - | 456 | 804 | IPR023214 | - | |
| Trre15g03692 | 1020 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 461 | 467 | IPR018303 | - | |
| Trre15g03692 | 1020 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Trre15g03692 | 1020 | Gene3D | - | 469 | 663 | IPR023299 | GO:0000166 | |
| Trre15g03692 | 1020 | FunFam | Calcium-transporting ATPase | 652 | 804 | - | - | |
| Trre15g03692 | 1020 | Gene3D | - | 174 | 1007 | - | - | |
| Trre15g03692 | 1020 | Pfam | E1-E2 ATPase | 243 | 437 | - | - | |
| Trre15g03692 | 1020 | Pfam | Cation transporting ATPase, C-terminus | 844 | 1012 | IPR006068 | - | |
| Trre15g03692 | 1020 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 123 | 1019 | IPR023298 | - | |
| Trre15g03692 | 1020 | SUPERFAMILY | HAD-like | 457 | 864 | IPR036412 | - | |
| Trre15g03692 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 290 | 304 | - | - | |
| Trre15g03692 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 759 | 778 | - | - | |
| Trre15g03692 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 678 | 688 | - | - | |
| Trre15g03692 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 656 | 667 | - | - | |
| Trre15g03692 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 783 | 795 | - | - | |
| Trre15g03692 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 459 | 473 | - | - | |
| Trre15g03692 | 1020 | FunFam | Calcium-transporting ATPase | 469 | 663 | - | - | |
| Trre15g03692 | 1020 | FunFam | Calcium-transporting ATPase | 776 | 1020 | - | - | |
| Trre15g03692 | 1020 | FunFam | Calcium-transporting ATPase | 222 | 342 | - | - | |
| Trre15g03692 | 1020 | Pfam | Cation transport ATPase (P-type) | 519 | 597 | - | - | |
| Trre15g03692 | 1020 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 50 | IPR024750 | GO:0005516 | |
| Trre15g03692 | 1020 | NCBIfam | HAD-IC family P-type ATPase | 400 | 491 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trre15g03692 | 1020 | NCBIfam | HAD-IC family P-type ATPase | 729 | 843 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trre15g03692 | 1020 | NCBIfam | HAD-IC family P-type ATPase | 551 | 704 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trre15g03692 | 1020 | CDD | P-type_ATPase_Ca_PMCA-like | 150 | 892 | - | - | |
| Trre15g03692 | 1020 | SFLD | p-type atpase | 441 | 811 | IPR044492 | - | |
| Trre15g03692 | 1020 | Gene3D | - | 144 | 342 | - | - | |
| Trre15g03692 | 1020 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 116 | 1020 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Trre15g03692 | 1020 | Gene3D | - | 17 | 77 | - | - | |
| Trre15g03692 | 1020 | Pfam | Cation transporter/ATPase, N-terminus | 123 | 191 | IPR004014 | - | |
| Trre15g03692 | 1020 | SUPERFAMILY | Calcium ATPase, transduction domain A | 245 | 339 | IPR008250 | - | |
| Trre15g03692 | 1020 | SFLD | C1.7: P-type atpase like | 441 | 811 | - | - | |
| Trre15g03692 | 1020 | PRINTS | H+-transporting ATPase (proton pump) signature | 759 | 775 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trre15g03692 | 1020 | PRINTS | H+-transporting ATPase (proton pump) signature | 615 | 633 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trre15g03692 | 1020 | PRINTS | H+-transporting ATPase (proton pump) signature | 791 | 816 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre15g03692 | Trre-Chr15 | 45648055 | 45657247 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre15g03692 | 1 | 1020 | Primary Pumps ATPases | AT4G37640 | 81.489 | 0.0 | 1706 |