Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03685 ATGGATACATTGTTTAGGCTAGTCAATTTTCACCAACAACCACAATATCAACCTGATCCTTCCATCAACTCCACCACCACCTTAACAACATCAAGCAGTTCTAGATCCTCAAGACAAACAACACCAACAACAACATATTACTACAATCATCAACAACAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAATAATGAAGATGACTTATCTTCATCTTCCTCTAAACAACATTACTATAATTATCCTTATGATCAAACTCATCACCACCATGTTTCTCCTACTACTATTACTACTACTGCTTCAAACACACACACCACCTTTAATACTATTAACACCCCCACAAACACCGATATTAATTACTCTTATTCACCTTCTCAAGACTACTTCAACTTCGATTTCTCCGGTAACAACTCATGGTCACAAAACATCCTCCTTGAAACCGCACGTGCTATTTCCGACAACAACACAAACCGAATCCAACAACTTATGTGGATGCTAAATGAGCTTAGTTCTCCTTATGGTGACACGGATCAAAAACTTTCATCTTATTTTCTTCAAGCTTTGTTTAGTCGAATGAATGATGCAGGTGATAGAACATACAAAACATTAACATTTGCATCGGAGAAAACATGTTCTTTTGATTCAACGAGGAAGATGTTGTTGAAGTTTCAAGAAGTTAGTCCGTGGACAACGTTTGGACACGTGGCGTCAAATGGAGCTATCTTAGAAGCATTAGAAGGTAACCCTAAACTTCACATAATTGATATTAGCAACACTTATTGCACTCAGTGGCCAACGCTTCTCGAAGCGCTGGCCAGTCGCTCGGACGATACTCCTCATCTTCGTTTAACTACAATTGTCACCGCTGTCAGCGGTGGCTCAGTTCAAAAAGTCATGAAGGAAATTGGTTCAAGGATGGAGAAATTCGCGAGGCTAATGGGTGTGCCGTTTAAATTCAAAATCATTTTCAGCGATTTAAGAGAGTTGAATTTAAGTGAGTTAGATATCAAAGAAGATGAAGCATTGGCTATAAATTGTGTTAACTCTTTGCACTCAATATCGGGCGCGGGAAACCACCGCGACAAATTTATATCTTTGCTTCGAGAATTAGAGCCTAGGGTTATGACGGTGGTTGAAGAGGAAGCCGATTTCGAGGTTTGTTTTGGTTCAGATTTCGTGGAAGGTTTCGGAGAGTGTTTAAGATGGTTTAGGGTTTATTTTGAAGCACTTGAAGAGAGTTTTTCAAGAACAAGTTGCGAAAAGTTAATGCTTGAAAGAGAAGCAGGGAGAAGTATTGTTGATTTAGTTGCTTGTGATGCTATTGAATCAGTGGAGAGACGTGAAACGGCGTCACGGTGGAGGAGAAGGTTGCATGGTGGAGGGTTCAATACGGTGTCGTTTAGTGATGAAGTGTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAGAGAAGGTTGGTCAATGACACAGTGTTCTTCTTCTTCTTCCGATGACGGAATATTCTTGTCGTGGAAGGAAAAGCCGGTGGTGTGGGCCAGTGTGTGGAGGCCATGA 1578 0.4024 MDTLFRLVNFHQQPQYQPDPSINSTTTLTTSSSSRSSRQTTPTTTYYYNHQQQQEEDEECFNNFYYMDHNNNNEDDLSSSSSKQHYYNYPYDQTHHHHVSPTTITTTASNTHTTFNTINTPTNTDINYSYSPSQDYFNFDFSGNNSWSQNILLETARAISDNNTNRIQQLMWMLNELSSPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTFASEKTCSFDSTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPKLHIIDISNTYCTQWPTLLEALASRSDDTPHLRLTTIVTAVSGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLSELDIKEDEALAINCVNSLHSISGAGNHRDKFISLLRELEPRVMTVVEEEADFEVCFGSDFVEGFGECLRWFRVYFEALEESFSRTSCEKLMLEREAGRSIVDLVACDAIESVERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYREGWSMTQCSSSSSDDGIFLSWKEKPVVWASVWRP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03685 525 MobiDBLite consensus disorder prediction 14 42 - -
Trre15g03685 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 514 IPR005202 -
Trre15g03685 525 Pfam GRAS domain family 150 524 IPR005202 -
Trre15g03685 525 ProSiteProfiles GRAS family profile. 139 524 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03685 Trre-Chr15 45532954 45534531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03685 1 525 GRAS Transcription Factor Family AT4G37650 54.762 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre15g03685 GRAS 2.3e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03685 - - tpra:123919748 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03685 15 45532954 45534531 Trre15g03685 15 45532954 45534531 ECH
Trre9g00734 9 5439398 5440867 Trre15g03685 15 45532954 45534531 PCT