Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03679 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTGAAAGCTGGAGTTGTCAAACATGGGTCAGGAAAATGGCGCACTATACTTACTGATCCCGAGTTCAGTTCCATTTTGCGTACCCGGTCCAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTTGCACTTCCAGCCCCCAAAACTAACAATAACCAATTGGCCGTGAGTAAAGTAGTTCAACGTGAAGACATTCTTGATGTTAAGCCCCTAGCAGTTTCTAGGGGAACATTACAATCTCCGAATTCAAAAGAACAAGTATCAAGGTTGGGGGATAATCATGTACTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTACTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAACAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAATCCAGGAAAAGCAGAAGTACAAAATTATGGCCAGTTCAACGGTCTCTGAGAAAAGTAGAAGCTCTTCCTTGATGCTCGTTGAAGCGAGGCCCAAAGATTCTCCAGAAGTGGATAAGAGTGGCGAGGTCAAGATGCTTTCAAAATTCCAAATTGATGAAGAGATATCAAAAACGAAAGGGATGTCAGCTCAAGAGGCGGCTGTTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCGCAGGCCGAGGAAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCGAGCCTTCGCAAAAGCAACGATGAAGGCGCTCAAAAGCAAACTTCATATTTGGTACCTTTCTCAGTCAATCACTCCTTTAGAATCTTCACACACTTATATATTTAGTTCTTTTAAAGCTTTAACCATTGCTGCATTATTCTGA 981 0.4383 MGAPKQKWTAEEEAALKAGVVKHGSGKWRTILTDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLALPAPKTNNNQLAVSKVVQREDILDVKPLAVSRGTLQSPNSKEQVSRLGDNHVLEAIVNMKEPKGSDKAAIATYIEEKYQCPPNLRKLLSTKLQQMVTSGKIIQEKQKYKIMASSTVSEKSRSSSLMLVEARPKDSPEVDKSGEVKMLSKFQIDEEISKTKGMSAQEAAVAAAKAVAEAEVAIAQAEEAAREAEAAEAEAEAARAFAKATMKALKSKLHIWYLSQSITPLESSHTYIFSSFKALTIAALF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03679 326 SUPERFAMILY "Winged helix" DNA-binding domain 127 197 IPR036390 -
Trre15g03679 326 Gene3D - 2 59 - -
Trre15g03679 326 CDD SANT_TRF 6 57 - -
Trre15g03679 326 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Trre15g03679 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Trre15g03679 326 SMART sant 4 59 IPR001005 -
Trre15g03679 326 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre15g03679 326 Pfam linker histone H1 and H5 family 129 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g03679 326 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g03679 326 SMART h15plus2 125 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g03679 326 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Trre15g03679 326 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre15g03679 326 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre15g03679 326 Coils Coil 245 282 - -
Trre15g03679 326 Gene3D - 126 201 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03679 Trre-Chr15 45463513 45466919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03679 1 297 Single Myb Histone (SMH) Gene Family AT5G67580 49.007 1.51e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g03679 Linker_histone 5.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03679 K09422 - gmx:100779583 355.14