Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03678 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTGAAAGCTGGAGTTGTCAAACATGGGTCAGGAAAATGGCGCACTATACTTACTGATCCCGAGTTCAGTTCCATTTTGCGTACCCGGTCCAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTTGCACTTCCAGCCCCCAAAACTAACAATAACCAATTGGCCGTGAGTAAAGTAGTTCAACGTGAAGACATTCTTGATGTTAAGCCCCTAGCAGTTTCTAGGGGAACATTACAATCTCCGAATTCAAAAGAACAAGTATCAAGGTTCGAGAACTTTCAGTTGGGGGATAATCATGTACTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTACTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAACAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAATCCAGGAAAAGCAGAAGTACAAAATTATGGCCAGTTCAACGGTCTCTGAGAAAAGTAGAAGCTCTTCCTTGATGCTCGTTGAAGCGAGGCCCAAAGATTCTCCAGAAGTGGATAAGAGTGGCGAGGTCAAGATGCTTTCAAAATTCCAAATTGATGAAGAGATATCAAAAACGAAAGGGATGTCAGCTCAAGAGGCGGCTGTTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCGCAGGCCGAGGAAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCGAGCCTTCGCAAAAGCAACGATGAAGGCGCTCAAAAGCAAACTTCATATTTGGTACCTTTCTCAGTCAATCACTCCTTTAGAATCTTCACACACTTATATATTTAGTTCTTTTAAAGCTTTAACCATTGCTGCATTATTCTGA 996 0.4378 MGAPKQKWTAEEEAALKAGVVKHGSGKWRTILTDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLALPAPKTNNNQLAVSKVVQREDILDVKPLAVSRGTLQSPNSKEQVSRFENFQLGDNHVLEAIVNMKEPKGSDKAAIATYIEEKYQCPPNLRKLLSTKLQQMVTSGKIIQEKQKYKIMASSTVSEKSRSSSLMLVEARPKDSPEVDKSGEVKMLSKFQIDEEISKTKGMSAQEAAVAAAKAVAEAEVAIAQAEEAAREAEAAEAEAEAARAFAKATMKALKSKLHIWYLSQSITPLESSHTYIFSSFKALTIAALF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03678 331 Coils Coil 250 287 - -
Trre15g03678 331 Pfam linker histone H1 and H5 family 134 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g03678 331 CDD SANT_TRF 6 57 - -
Trre15g03678 331 Gene3D - 131 206 IPR036388 -
Trre15g03678 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Trre15g03678 331 PANTHER SINGLE MYB HISTONE 4 1 298 IPR044597 GO:0003691
Trre15g03678 331 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre15g03678 331 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Trre15g03678 331 SMART sant 4 59 IPR001005 -
Trre15g03678 331 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g03678 331 SMART h15plus2 130 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre15g03678 331 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre15g03678 331 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre15g03678 331 Gene3D - 2 59 - -
Trre15g03678 331 SUPERFAMILY "Winged helix" DNA-binding domain 132 202 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03678 Trre-Chr15 45463513 45466919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03678 1 302 Single Myb Histone (SMH) Gene Family AT5G67580 47.883 5.15e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g03678 Linker_histone 5.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03678 K09422 - gmx:100779583 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00728 9 5392142 5394334 Trre15g03678 15 45463513 45466919 PCT