Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03675 ATGGCGCAGAAAGAGATTGAAAGGAAGAAGATTCTTGCGTTAGCTCCCATTGCAAAACCTCTTGCTGGGAAGAAACTTTCCAAGAAAACACTCAAGCTTGTTAAAAGAGCTGCTGAAAACAAGTGCATAAAGAGAGGGGTTAAGGAAGTGGTCAAAAGTATACGGCGAGGTCAAAAAGGAGTGTGTGTTATAGCTGGGAACATATCGCCAATTGATGTCATCACTCACGTTCCTGTTCTATGTGAAGAAGCTGACATTCCATATGTTTATGTCCCATCTAAAGAAGACCTTGCATCTGCAGGAGCAACAAAGAGGCCTACATGTTGTGTTTTAGTGATGACCAAACCTTCAAAGGGTGAACTAGCTCAAGAGGCACAAGAAAAACTAAAGTCAGAGTACGATCAAGTTGCATCTGAAATCACTGAGCTAACAACATCACTTTTTTGA 447 0.4139 MAQKEIERKKILALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCVIAGNISPIDVITHVPVLCEEADIPYVYVPSKEDLASAGATKRPTCCVLVMTKPSKGELAQEAQEKLKSEYDQVASEITELTTSLF 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03675 148 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 114 IPR004038 -
Trre15g03675 148 Gene3D - 9 144 IPR029064 -
Trre15g03675 148 PRINTS High mobility group-like nuclear protein signature 16 29 IPR002415 GO:0003723|GO:0005730
Trre15g03675 148 PRINTS High mobility group-like nuclear protein signature 46 56 IPR002415 GO:0003723|GO:0005730
Trre15g03675 148 PRINTS High mobility group-like nuclear protein signature 90 102 IPR002415 GO:0003723|GO:0005730
Trre15g03675 148 PRINTS High mobility group-like nuclear protein signature 29 44 IPR002415 GO:0003723|GO:0005730
Trre15g03675 148 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 12 138 - -
Trre15g03675 148 FunFam H/ACA ribonucleoprotein complex subunit NHP2 11 143 - -
Trre15g03675 148 SUPERFAMILY L30e-like 10 131 IPR029064 -
Trre15g03675 148 PRINTS Ribosomal protein L7A/RS6 family signature 88 102 IPR018492 -
Trre15g03675 148 PRINTS Ribosomal protein L7A/RS6 family signature 43 57 IPR018492 -
Trre15g03675 148 PRINTS Ribosomal protein L7A/RS6 family signature 62 75 IPR018492 -
Trre15g03675 148 PRINTS Ribosomal protein L7A/RS6 family signature 78 88 IPR018492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03675 Trre-Chr15 45433153 45434888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03675 43 115 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.767 8.30e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03675 K11129 - sspl:121760190 242.276