Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03648 ATGAAGAGAATGATGGAAAATGATAATGATGATGATGGTGTTGACATTAACAATGAAAATAACTGGTTAGGTTTTTCACTCTCTCCACAAATGAATAATATTGATATTCCTTCACATACTCATCAGTCACAAAATTCTTCTTCTTCTTCTGTTTCTCAAGTAGTTCCACTTCCACCAAGCTTTTACAATTCTACCCCTCTTAGTAACTATTGTTTCTCCTCTTATGGACTTGAACATGAAAATGTTGGTTTGTATTCTTTACTTCCCATTATGCCCCTCAAATCTGATGGATCTCTTTATGAAATGGAATCTCTTAGCAGGTCACAAACACAAGCAATGGCTACTACTTCAGAACCAAAACTAGAGAATTTCTTAGGTAATGAAACTATGGGGACCCCTCAATATGCATGTACTAGTACTACTACTGTCACAGAAATAATGCCTTTGAGTTTAGACAGTATGTTCCAAAATCAAGTTCAACACATGAACAATCAACAACAATTATCATATTATGATTTAATGTTAGAAGGGTCAAAGCAAAACCAAAATTCAAGTGGAAATTTCAATGTTTCAAACATGAATGAAGATCATGGACTAAGTGGTTTAAAGAATTGGGTTTTAAGGAATTTTCCAACTAATCATCATGGACATGATGAGTCAAAAATGATTGTTCCTGTTGTTGTAGATGAAAATGTAAGTGAATCTTGTTCCAATATTGGTTCAATGACTTATGGTGATTTGCATTCTTTGAGCTTATCAATGAGTCCTAGTTCACAATCTAGCTGTGTTACAACTTCTCAGAATATGTCTTCAGCTGTTGTTGATAATTCTGTTGCTTTGGATACTAAGAAAAGAGGAAATGAAAAGATTGAGCAGAAACAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACCTCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGCAGACATCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGAGTTGCTGGTAACAAAGATTTATATCTTGGAACCTTCAGTACACAAGAGGAAGCCGCTGAAGCCTATGACATAGCAGCTATAAAATTTAGAGGAGCAAATGCAGTAACAAACTTTGATATCATAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCATTGATCTAGCTAGAAGGAACAAAGTAGTAGATATTAGTACAACTCAATGCATTGATCAAAACAAGCCTAATTCATCTGCATATGACAATAACACTCAAGAAGCAATTTTAATGCAGCAGAAGAATATGGTTCTGTATCAATCCTCTCAACAACAGAATCAACCAAGAATTGAGAATGAAAGAACTCATCAATCATTTTCATCGGTATCTTTCGATAACATGTTTCATCAAGAAGTAGTAGTAGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGGTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGGGAAGGTAGTCCTGATAAAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTCCAAATAGTAATGTGAATTCATGGGACCCTTCACTTCATCTTAGGACTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1905 0.357 MKRMMENDNDDDGVDINNENNWLGFSLSPQMNNIDIPSHTHQSQNSSSSSVSQVVPLPPSFYNSTPLSNYCFSSYGLEHENVGLYSLLPIMPLKSDGSLYEMESLSRSQTQAMATTSEPKLENFLGNETMGTPQYACTSTTTVTEIMPLSLDSMFQNQVQHMNNQQQLSYYDLMLEGSKQNQNSSGNFNVSNMNEDHGLSGLKNWVLRNFPTNHHGHDESKMIVPVVVDENVSESCSNIGSMTYGDLHSLSLSMSPSSQSSCVTTSQNMSSAVVDNSVALDTKKRGNEKIEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIDLARRNKVVDISTTQCIDQNKPNSSAYDNNTQEAILMQQKNMVLYQSSQQQNQPRIENERTHQSFSSVSFDNMFHQEVVVEEASKMRTHVSNGSSLATSLSSSREGSPDKTSLQNLSGIMPPNSNVNSWDPSLHLRTQMPVFAAWTDA 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03648 634 Gene3D AP2/ERF domain 309 375 IPR036955 GO:0003700|GO:0006355
Trre15g03648 634 Gene3D AP2/ERF domain 409 470 IPR036955 GO:0003700|GO:0006355
Trre15g03648 634 CDD AP2 309 373 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 SMART rav1_2 310 379 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 SMART rav1_2 409 474 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 MobiDBLite consensus disorder prediction 33 54 - -
Trre15g03648 634 ProSiteProfiles AP2/ERF domain profile. 310 373 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 FunFam AP2-like ethylene-responsive transcription factor ANT 309 375 - -
Trre15g03648 634 MobiDBLite consensus disorder prediction 572 608 - -
Trre15g03648 634 CDD AP2 408 469 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 MobiDBLite consensus disorder prediction 573 608 - -
Trre15g03648 634 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 112 546 - -
Trre15g03648 634 Pfam AP2 domain 310 365 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 Pfam AP2 domain 410 460 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 SUPERFAMILY DNA-binding domain 309 375 IPR016177 GO:0003677
Trre15g03648 634 FunFam AP2-like ethylene-responsive transcription factor 408 470 - -
Trre15g03648 634 ProSiteProfiles AP2/ERF domain profile. 409 468 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 PRINTS Ethylene responsive element binding protein signature 311 322 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 PRINTS Ethylene responsive element binding protein signature 450 470 IPR001471 GO:0003700|GO:0006355
Trre15g03648 634 SUPERFAMILY DNA-binding domain 408 468 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03648 Trre-Chr15 44990780 44993928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03648 8 492 AP2-EREBP Transcription Factor Family AT4G37750 51.737 6.34e-152 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g03648 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03648 K09285 - gmx:100792451 792.727