Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03647 ATGAAGAGAATGATGGAAAATGATAATGATGATGATGGTGTTGACATTAACAATGAAAATAACTGGTTAGGTTTTTCACTCTCTCCACAAATGAATAATATTGATATTCCTTCACATACTCATCAGTCACAAAATTCTTCTTCTTCTTCTGTTTCTCAAGTAGTTCCACTTCCACCAAGCTTTTACAATTCTACCCCTCTTAGTAACTATTGTTTCTCCTCTTATGGACTTGAACATGAAAATGTTGGTTTGTATTCTTTACTTCCCATTATGCCCCTCAAATCTGATGGATCTCTTTATGAAATGGAATCTCTTAGCAGGTCACAAACACAAGCAATGGCTACTACTTCAGAACCAAAACTAGAGAATTTCTTAGGTAATGAAACTATGGGGACCCCTCAATATGCATGTACTAGTACTACTACTGTCACAGAAATAATGCCTTTGAGTTTAGACAGTATGTTCCAAAATCAAGTTCAACACATGAACAATCAACAACAATTATCATATTATGATTTAATGTTAGAAGGGTCAAAGCAAAACCAAAATTCAAGTGGAAATTTCAATGTTTCAAACATGAATGAAGATCATGGACTAAGTGGTTTAAAGAATTGGGTTTTAAGGAATTTTCCAACTAATCATCATGGACATGATGAGTCAAAAATGATTGTTCCTGTTGTTGTAGATGAAAATGTAAGTGAATCTTGTTCCAATATTGGTTCAATGACTTATGGTGATTTGCATTCTTTGAGCTTATCAATGAGTCCTAGTTCACAATCTAGCTGTGTTACAACTTCTCAGAATATGTCTTCAGCTGTTGTTGATAATTCTGTTGCTTTGGATACTAAGAAAAGAGGAAATGAAAAGATTGAGCAGAAACAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACCTCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGACATCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGAGTTGCTGGTAACAAAGATTTATATCTTGGAACCTTCAGTACACAAGAGGAAGCCGCTGAAGCCTATGACATAGCAGCTATAAAATTTAGAGGAGCAAATGCAGTAACAAACTTTGATATCATAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCATTGATCTAGCTAGAAGGAACAAAGTAGTAGATATTAGTACAACTCAATGCATTGATCAAAACAAGCCTAATTCATCTGCATATGACAATAACACTCAAGAAGCAATTTTAATGCAGCAGAAGAATATGGTTCTGTATCAATCCTCTCAACAACAGAATCAACCAAGAATTGAGAATGAAAGAACTCATCAATCATTTTCATCGGTATCTTTCGATAACATGTTTCATCAAGAAGTAGTAGTAGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGGTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGGGAAGGTAGTCCTGATAAAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTCCAAATAGTAATGTGAATTCATGGGACCCTTCACTTCATCTTAGGACTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1902 0.3565 MKRMMENDNDDDGVDINNENNWLGFSLSPQMNNIDIPSHTHQSQNSSSSSVSQVVPLPPSFYNSTPLSNYCFSSYGLEHENVGLYSLLPIMPLKSDGSLYEMESLSRSQTQAMATTSEPKLENFLGNETMGTPQYACTSTTTVTEIMPLSLDSMFQNQVQHMNNQQQLSYYDLMLEGSKQNQNSSGNFNVSNMNEDHGLSGLKNWVLRNFPTNHHGHDESKMIVPVVVDENVSESCSNIGSMTYGDLHSLSLSMSPSSQSSCVTTSQNMSSAVVDNSVALDTKKRGNEKIEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIDLARRNKVVDISTTQCIDQNKPNSSAYDNNTQEAILMQQKNMVLYQSSQQQNQPRIENERTHQSFSSVSFDNMFHQEVVVEEASKMRTHVSNGSSLATSLSSSREGSPDKTSLQNLSGIMPPNSNVNSWDPSLHLRTQMPVFAAWTDA 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03647 633 ProSiteProfiles AP2/ERF domain profile. 409 467 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 CDD AP2 309 373 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 Gene3D AP2/ERF domain 309 375 IPR036955 GO:0003700|GO:0006355
Trre15g03647 633 Gene3D AP2/ERF domain 409 469 IPR036955 GO:0003700|GO:0006355
Trre15g03647 633 MobiDBLite consensus disorder prediction 33 54 - -
Trre15g03647 633 ProSiteProfiles AP2/ERF domain profile. 310 373 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 FunFam AP2-like ethylene-responsive transcription factor ANT 309 375 - -
Trre15g03647 633 SUPERFAMILY DNA-binding domain 309 375 IPR016177 GO:0003677
Trre15g03647 633 MobiDBLite consensus disorder prediction 571 607 - -
Trre15g03647 633 Pfam AP2 domain 310 365 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 Pfam AP2 domain 410 459 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 MobiDBLite consensus disorder prediction 572 607 - -
Trre15g03647 633 FunFam AP2-like ethylene-responsive transcription factor 408 469 - -
Trre15g03647 633 SMART rav1_2 409 473 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 SMART rav1_2 310 379 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 CDD AP2 408 468 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 PRINTS Ethylene responsive element binding protein signature 311 322 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 PRINTS Ethylene responsive element binding protein signature 449 469 IPR001471 GO:0003700|GO:0006355
Trre15g03647 633 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 112 545 - -
Trre15g03647 633 SUPERFAMILY DNA-binding domain 408 467 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03647 Trre-Chr15 44990780 44993928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03647 8 491 AP2-EREBP Transcription Factor Family AT4G37750 51.838 9.03e-154 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g03647 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03647 K09285 - gmx:100792451 786.563