Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03627 ATGAATCTGAACCTTCTAAACACAACTTCTGGTGTGAATGAAACTAATCATTCTAGAGGCCAGTCCATTGATCTTGGACAAGTAAATGTTGCTACAAGTTCTGCTAGGAACTCAGATTTTGACCGTGGTCTGAATACTGATACTTGGGTTTATGATCAAAATTCTTTAAAGGATGCGCCACTAGCTTCTAAACTTGCATCACCTAATATACAGGAAAATTTTAACCTTCAGCTGGAAAAGTTGAGAATTGAACTAAGTCATGTCCAAGGAATGCATGCAGTAGCTCAAAATGAGAACATCGATGCATCGCGAAAGCAAAGTGAACTAAGCAAGAGGAGATCGGGAGAATCCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGGTGGCTCAAGAATTAGCAAGACAAGCAATACAGAAATATGAAGCTGCAGCAAGAGAAGCTGCATATTTGAAAGAAAGTTCTGAAAGAGAAGCTTCAGAAAGAAAAGAAACAGAATTGAAAGCTATTTGTGCTGCCAAAGAGAAAGAAAAACTAGAGGATGCTCTGAGTGGTTCCACACCTCAATACGGAAATTTTTTGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCAAAGAATTGGAATGGGAGCATATGGAATGGTCCAAAACAAGCAATTCCAGCAAGAGGATGTGATGGACGATCCTTGTGTTGTCGCAGATGGATATACATACAATCGAAAAGCAATTGAAAAATGGCTTGAAGAGAATGACAAATCACCAATGACAAACATGGCTTTGCATCATAAGTTTCTAATTCCTAATTACACACTTTTATCAGCAATTTTGGAATGGAAATCAAAAGAAATATGA 864 0.3773 MNLNLLNTTSGVNETNHSRGQSIDLGQVNVATSSARNSDFDRGLNTDTWVYDQNSLKDAPLASKLASPNIQENFNLQLEKLRIELSHVQGMHAVAQNENIDASRKQSELSKRRSGESMKMKEIIAKEEVAQELARQAIQKYEAAAREAAYLKESSEREASERKETELKAICAAKEKEKLEDALSGSTPQYGNFLWDEIVSATSSFSEDQRIGMGAYGMVQNKQFQQEDVMDDPCVVADGYTYNRKAIEKWLEENDKSPMTNMALHHKFLIPNYTLLSAILEWKSKEI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03627 287 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g03627 287 Pfam U-box domain 228 285 IPR003613 GO:0004842|GO:0016567
Trre15g03627 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 287 IPR013083 -
Trre15g03627 287 SMART Ubox_2 228 282 IPR003613 GO:0004842|GO:0016567
Trre15g03627 287 Coils Coil 162 182 - -
Trre15g03627 287 CDD RING-Ubox_WDSUB1-like 228 272 - -
Trre15g03627 287 PANTHER OS02G0152300 PROTEIN 40 223 - -
Trre15g03627 287 ProSiteProfiles U-box domain profile. 228 287 IPR003613 GO:0004842|GO:0016567
Trre15g03627 287 SUPERFAMILY RING/U-box 228 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03627 Trre-Chr15 44662833 44664372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03627 227 284 U-box Gene Family AT4G25160 63.793 1.45e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03627 - - gmx:100818628 277.33