Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03621 ATGGGTCTTAATAACCAAGATGCTAGTAACAATCCAAGCCTTCAACTTATTCTAGGCTTAGCTCTCACTCTTACCAAACAAGACACACCAACATCATCCAACAACAACGTTGTCACAAAACCATATTCATCAAATAATAACAACAACAACTATGAAACAGAACCATCTTTAACGTTGGGTTTATCCAATAAAAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAATTCACCTCATCATAGCGTTGTTTCTTCTTTCTCTACTGGAAGAGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACAACTGAAATTGAGAGAGTTTCTTCTAGAATCAGTGATGAAGATGAAGATGGTTCCACTGCAGCTAGAAAAAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAAAAGCAAGCTTTAGCTAGAGAGTTAAATCTAACACCTCGACAAGTTGAAGTTTGGTTCCAGAACAGGCGAGCTAGAACAAAGCTGAAGCAAACAGAGGTAGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTATCAGATGAGAATAGGAGGCTACAAAAAGAGGTGCAAGAATTGAAGGCACTAAAATTAGGACAACCTTTGTATATGCCTATGCCAGCTGCTACCCTTAGCATGTGCCCTTCTTGTGAGAGATTAGGTGGTGGTGGCGGCGGTGGCGGTGGCGGTGGTGTTAATGGTGGTTCTTCCAATAAGAACAATTTCTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTTACCAATTCTTCTGCAGCATGTTGA 852 0.3955 MGLNNQDASNNPSLQLILGLALTLTKQDTPTSSNNNVVTKPYSSNNNNNNYETEPSLTLGLSNKSYYEEPLDFSTQTNSPHHSVVSSFSTGRVKRERDVSSELEMETTEIERVSSRISDEDEDGSTAARKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLSDENRRLQKEVQELKALKLGQPLYMPMPAATLSMCPSCERLGGGGGGGGGGGVNGGSSNKNNFSMAPKPHFYNPFTNSSAAC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03621 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 249 - -
Trre15g03621 283 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Trre15g03621 283 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Trre15g03621 283 FunFam Homeobox-leucine zipper protein 18 114 190 - -
Trre15g03621 283 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355|GO:0043565
Trre15g03621 283 MobiDBLite consensus disorder prediction 27 51 - -
Trre15g03621 283 SUPERFAMILY Homeodomain-like 122 186 IPR009057 -
Trre15g03621 283 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Trre15g03621 283 CDD homeodomain 129 186 IPR001356 GO:0003677
Trre15g03621 283 Coils Coil 191 218 - -
Trre15g03621 283 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Trre15g03621 283 Gene3D - 133 183 - -
Trre15g03621 283 SMART HOX_1 127 189 IPR001356 GO:0003677
Trre15g03621 283 MobiDBLite consensus disorder prediction 95 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03621 Trre-Chr15 44492071 44493420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03621 1 283 Homeobox Transcription Factor Family AT4G37790 60.616 1.90e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g03621 Homeodomain 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03621 K09338 - gmx:100784937 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00693 9 5038055 5039530 Trre15g03621 15 44492071 44493420 PCT