Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03595 ATGATTCAAATTTCATCAACCAACTACATGCCTCAATTACTTGGAATAGAGGATGCTTTGTTTAATGATCATGATTACCCAATGGATTCATTTGCATTCCAATATGATGATATGGCATATTTCAAGTCTTTCTCAGAATCACCACCGGAGAGTTCTTATTCCTCTCCTAATAACAATCGTAAGCGCTTTCATTCCGAAAGCACGCAAAACAGCTCTATCCCGATTCATAGTAGTCCTGATCAATCTGTTGCTTCAGCAACACCACCAACTAAACTACTCAAAGCTTCTTCCAAAATCATTTCATTCGACCACTCTGATACATCTTCTGCTCGACCATTCTACGACATGGATGCAAAGGTTAAGAAACCTAAAGCTGAGATGGAGTATGGTGAAAACTTGAACTTTGCAAGTTTGATTTCTCAAGGTGAGAACAAGGTCGTGAATCGAAACCCAATCCAGGCTCGAGATCATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCCTCCATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAATCATTTGAACCAACTAAAGGAACGAGTGAAGACTTTGGAGGAACAAGTAGCCAATAAAAAAGTCGAATCCGCAGTATTTGTGAAGAGATCTATTATCTTCGCCGATGATGATAGCTCCTCTTGTGACGAAAATTCACATCAATCACTACCGAAAATCGAAGCAAGAGTTTATGGTAAAGACATGCTCATCAGAATCCACTGCGACAAACACACTGGCCGAACTGCGACAACAATACTCAACGAACTCGAAAAGCACCATCTCACTGTTCACACTAGTTCTATTTTGCCATTTGGAAATAACTATCTTGACATAACCATTGTTGCTCAGATGAACAAAGAATATTGCTTGACAATAAAGGATCTCATAAGAAGCATAAGTCATGTTTTGAGCAAGCTCATTTGA 990 0.3929 MIQISSTNYMPQLLGIEDALFNDHDYPMDSFAFQYDDMAYFKSFSESPPESSYSSPNNNRKRFHSESTQNSSIPIHSSPDQSVASATPPTKLLKASSKIISFDHSDTSSARPFYDMDAKVKKPKAEMEYGENLNFASLISQGENKVVNRNPIQARDHVMAERKRREKLSQRFIALSSILPGLKKMDKATILEDAINHLNQLKERVKTLEEQVANKKVESAVFVKRSIIFADDDSSSCDENSHQSLPKIEARVYGKDMLIRIHCDKHTGRTATTILNELEKHHLTVHTSSILPFGNNYLDITIVAQMNKEYCLTIKDLIRSISHVLSKLI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03595 329 Coils Coil 191 218 - -
Trre15g03595 329 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Trre15g03595 329 PANTHER BHLH TRANSCRIPTION FACTOR 38 327 - -
Trre15g03595 329 SMART finulus 158 207 IPR011598 GO:0046983
Trre15g03595 329 MobiDBLite consensus disorder prediction 46 88 - -
Trre15g03595 329 CDD bHLH_AtNAI1_like 154 226 - -
Trre15g03595 329 Gene3D - 144 218 IPR036638 GO:0046983
Trre15g03595 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Trre15g03595 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03595 Trre-Chr15 43618503 43619998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03595 148 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.594 3.30e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g03595 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03595 - - tpra:123921001 579.711