Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03585 ATGGGAACGATGTTAGATATGCTTGCCGATGTTGTTCCTGATAGAGAATCATGGCGTTTTAATGTTCGTATTATAAGGTTGTGGACTGTATACTCGAAAACGAAACCTGGCCACTTGAACTCCCTGGAGATCATTTTACTTGATGAAAAGGGTACAAAGATTCGTGCATCTGTTGCTCACAAGTTGTTGTATTTGTTTCGCCACCAACTATTTGAAGGGAATGTATATACGATGTCAAATTTTAAAGTTGGACTGGAAGCTTGTGTTAATCGTACAACTGCTCACCCCTATCAACTTCATTTTATCTACAAAACTAAAGTTTATAAATTTGAAAATAATTCAATAGGAAATTTTGGATTGACGTTAACTACAATTGCAAATATTCGTTGTTATGGTGCTAATCATGAATTTTTAGTCGATGTTTGTGGATTGGTTATGCGTACATCTTCAGAGAGACAATGTATCACTGATGGAAAAACTAACAAAGAGATTGTGCTTCACTTGTTTGATAATAGTGGTAATTGTGAATGTGTGTTGACTGGGGCCTATGTCGATGAATACCAAAATTTGGTTGATAGAGGTGGTGGTGGCCTTCCTATTATATTGATTCAGCTTGCTAAAATTCGATCTGATGAAGGGAAGATTTCAATTGAAACTTTCTTGAATGTAACTAGGATTTTGCTAAATCCTTTTATACCAGAAATGATTGCTTTCAAAGAAAGCCTTGCAATTGTTGGAGTTGTTTGTGTTGGGCCTCACACAAGACCATCAACTGACGAAGATTTCTTGACGAGAAATCCACCTATTTCAATATATAACTTGCGTAAAACTAACAAAGAAGGATTCTATATTGTTGGTGGTATTGTTGATTCCTTAGTGGACCCTGAACAATGGTGGTATCCTGCTTGTCCTTGTCATGCAAGTCTATCTCTCAATGCCAATGGATTTTATTGCAATGATTGTGCCACGGATGTCACCAATATGATTCCAAGGTTTAATGTAAAACTCAAAGTTAAGGATGGAACTGGGGAAGGGATTTTTGTTGTTCCTAATCAAGAGATGCATGATCTATTGAGTAAACACTGTCATGAACTCTTAACTGTGCACGAGGGAGATATTTCTGAATTTTATCCTTCAGAGTTGGAATTTCTCAAAGGGATAAAATTGTTGCTTAAGGTAGAGAAAAGTAATACTGATGATTCTAATTTTCCGGAAAATGCTATTAAAGTTGAGAAATTATGTGTTGATTTATCTCTTATCGATGCCTTTGATTCGCCGTTTCTTAATGAGATAACTGATTCTGAAGATGACGAATGA 1317 0.3591 MGTMLDMLADVVPDRESWRFNVRIIRLWTVYSKTKPGHLNSLEIILLDEKGTKIRASVAHKLLYLFRHQLFEGNVYTMSNFKVGLEACVNRTTAHPYQLHFIYKTKVYKFENNSIGNFGLTLTTIANIRCYGANHEFLVDVCGLVMRTSSERQCITDGKTNKEIVLHLFDNSGNCECVLTGAYVDEYQNLVDRGGGGLPIILIQLAKIRSDEGKISIETFLNVTRILLNPFIPEMIAFKESLAIVGVVCVGPHTRPSTDEDFLTRNPPISIYNLRKTNKEGFYIVGGIVDSLVDPEQWWYPACPCHASLSLNANGFYCNDCATDVTNMIPRFNVKLKVKDGTGEGIFVVPNQEMHDLLSKHCHELLTVHEGDISEFYPSELEFLKGIKLLLKVEKSNTDDSNFPENAIKVEKLCVDLSLIDAFDSPFLNEITDSEDDE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03585 438 SUPERFAMILY Nucleic acid-binding proteins 274 392 IPR012340 -
Trre15g03585 438 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Trre15g03585 438 CDD RPA1_DBD_A_like 22 107 - -
Trre15g03585 438 Gene3D - 5 109 IPR012340 -
Trre15g03585 438 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Trre15g03585 438 Gene3D - 120 246 IPR012340 -
Trre15g03585 438 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Trre15g03585 438 Pfam Replication factor-A C terminal domain 286 376 IPR013955 -
Trre15g03585 438 Gene3D - 260 417 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03585 Trre-Chr15 43565775 43567808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03585 8 376 Core DNA Replication Machinery Family AT5G08020 22.850 4.33e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03585 - - tpra:123893724 375.941