Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03584 ATGGAAGAATCATGGACTAATTGGTTATGTGATATGGAACCAGATGATTACAGCTTCATCAACCAATCAAGCATAAACACAGATATTAATCATGTTAGTAATTTAGAGAGACCTTCCAAGTTACACAAAACAGCTTCTTCTTCTTCCAGTTGCTCATACATTCTTACATTTGAAAATGAGAATCCACAACCAATAAAGGTTGAACCACCTTTGAAGACAAAAACCAAAGTTGTGAACTCAAGAAAGGTTAATATTCAAGAGAACAACAAGAAGAACGGTTCATTTTCCAAATCTACAAGTCATCACACACCAGATCACATAATTGCTGAGAGAATAAGGAGAGAAAAGATTAGCCAACAATTCATAGCTCTTTCAGCCCTTATTCCAAACCTCAAAAAGATGGACAAAGCCTCTATATTAGGTGATGCTATAAAGTATGTGAAGGAGCTTAAAGAGCAAGTGAAAGTGTTGGAAGAGCAAAGCAAAAGAAAAAGTGTAGAATCAGTTGTGGTTGTGAAGAAATTGTCTCAACTTTCTGTGGATGAAGATGTCTCAGACACTTCCTCAAATTCATGTGATGAAAACTCAGATGAAACCTCAAAAACATATTTGTCATCACTGCCAGAAGTTGAAGCTAGGTTGTCAGGGAAGAATGTGTTAATAAGAATTCTCTGTGAGAAAGATAAAGGAGTGATGGTGAATGTATATAGAGAGATAGAGAAACTTCATCTCTCAGTTATCAATGCTAGTTCCTTTTCCTTTGGTTCCTCTGTTCTTGCCATAACCATCATCGCCCGGATGGAGGAAGAGTTGAACATGAGCATCGAGAAAGTGGCAAAACAAGTGACATTTGGACTGGTGCAATTGAATTAG 873 0.37 MEESWTNWLCDMEPDDYSFINQSSINTDINHVSNLERPSKLHKTASSSSSCSYILTFENENPQPIKVEPPLKTKTKVVNSRKVNIQENNKKNGSFSKSTSHHTPDHIIAERIRREKISQQFIALSALIPNLKKMDKASILGDAIKYVKELKEQVKVLEEQSKRKSVESVVVVKKLSQLSVDEDVSDTSSNSCDENSDETSKTYLSSLPEVEARLSGKNVLIRILCEKDKGVMVNVYREIEKLHLSVINASSFSFGSSVLAITIIARMEEELNMSIEKVAKQVTFGLVQLN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03584 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Trre15g03584 290 Coils Coil 140 167 - -
Trre15g03584 290 PANTHER BHLH TRANSCRIPTION FACTOR 19 284 - -
Trre15g03584 290 SMART finulus 107 156 IPR011598 GO:0046983
Trre15g03584 290 Pfam Helix-loop-helix DNA-binding domain 106 150 IPR011598 GO:0046983
Trre15g03584 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 171 IPR036638 GO:0046983
Trre15g03584 290 Gene3D - 95 165 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03584 Trre-Chr15 43552323 43554675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03584 9 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.699 6.87e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g03584 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03584 - - mtr:11405744 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03584 15 43552323 43554675 Trre15g03584 15 43552323 43554675 ECH
Trre9g00672 9 4854925 4859606 Trre15g03584 15 43552323 43554675 PCT