Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03583 ATGTCAATGGAGGAAATCTACAACATCTCAGAAACCAGCAGCTGGTTATCTGATTTGGAAATGGATGAGTGCAATATATTTCCTGAGGAATGTAACCTGAATTTCCTTGATGCTGATGAGAATAACATAGCTACTGTCTTTCAAGAACAAACACAACAACAATGTTTGACTTCAGAGTCAACTCTCAGCAACTCATTCACTGATGAAACAAATTTTGACTCCTTTGACTTTGATTTTGAAACTGAGAGACCAACCAAGCAACTCAAAACAATTGATCAAAGTGAAAACATCAATGAAACCTTTTCACCAAAACTTTCTCCTTCTTCATCTAATTCATCTTTTCAGTCTCAGATTTTGTCCTTTGATAACTTAACAAATTCACCTGCTATCAACACCCCCCAATTTCATGGATTCACCCCTACCTTAAACTCAAAACAGAATGAAACAGTGTCAGTGTTTCCACCCCAATTGGGAAACATGAATGTTTCAACTCAAATTCCAAAAGGGTCATCAAAAAATCAAAACTTGGAAACAAAAACCTCACAAACCAAAAGGTCTAGAGCTCATGGTCATGATCATATCATGGCTGAGAGAAAACGAAGAGAAAAACTCAGCCAAAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAATCTAAAGAAGATGGACAAAGCTTCGGTATTAACTGACTCTATCAAATACATGAAAGAACTTAAAGATCGTTTGAAAGTTTTGGAAGAACAGAACAAGAAACAAGAAGCAGAGTCAGTGGTTGTTCTAAACAAACAAAAACTCTGTAGTAATGATGTCATTGACAACTCTTCATCATGTGATGAGAGCATTGAAGGTGCCAAAGAATCAATCTTACAAGTGGAAGCAAGAGTATCAGGGAAAGAGATGCTGATAAGGATTCATTGCCAGAAGCAGAAGGGACTTTTGGTTAAAATCATGGCTGAGATTCAAAGCTTTCAACTATTTTTTGTGAATAGCAGTGTTGTACCCTTTGGGGATTCCATGGACATTACTATCATTGCTCAGATGGGTGAAGGGTACAACTTGAGCATTAAGGAACTTGTGAAGAACCTGCGGATGGCTGCATTGAAGTTTATTAGTATGTCATCATAG 1122 0.3734 MSMEEIYNISETSSWLSDLEMDECNIFPEECNLNFLDADENNIATVFQEQTQQQCLTSESTLSNSFTDETNFDSFDFDFETERPTKQLKTIDQSENINETFSPKLSPSSSNSSFQSQILSFDNLTNSPAINTPQFHGFTPTLNSKQNETVSVFPPQLGNMNVSTQIPKGSSKNQNLETKTSQTKRSRAHGHDHIMAERKRREKLSQSFIALAALVPNLKKMDKASVLTDSIKYMKELKDRLKVLEEQNKKQEAESVVVLNKQKLCSNDVIDNSSSCDESIEGAKESILQVEARVSGKEMLIRIHCQKQKGLLVKIMAEIQSFQLFFVNSSVVPFGDSMDITIIAQMGEGYNLSIKELVKNLRMAALKFISMSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03583 373 Pfam Helix-loop-helix DNA-binding domain 193 237 IPR011598 GO:0046983
Trre15g03583 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 253 IPR036638 GO:0046983
Trre15g03583 373 Gene3D - 173 254 IPR036638 GO:0046983
Trre15g03583 373 Coils Coil 227 261 - -
Trre15g03583 373 PANTHER BHLH TRANSCRIPTION FACTOR 55 368 - -
Trre15g03583 373 SMART finulus 194 243 IPR011598 GO:0046983
Trre15g03583 373 MobiDBLite consensus disorder prediction 164 181 - -
Trre15g03583 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Trre15g03583 373 MobiDBLite consensus disorder prediction 164 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03583 Trre-Chr15 43545273 43547194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03583 12 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.813 7.44e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g03583 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03583 - - gmx:100788128 392.119