Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03582 ATGGAAGAAATCAACAACACACCAATGAACATATCTGATTTGAATATGGATGAATACAATTTATTTCCTGAGGAATGCAACCTTAATTTTCTAGATGCTGATGAGGAAGAGTTTCTTTCACATGACATAGTTACTACTACTGTCTTTCAAGAACAACAAACCCAACAACATCCTTTGACTTTAGAGTCAACAACTCTCAACAACTCATTCACTGATGAAACAAATTTTCAGTCTTTTAACTTTGATTTTGAAATTGAGAGACCAATAAAGCAGCTGAAAACAACTAATGACAGTGACAAAATCACTGAAACCTTGTCACCAAAACTTTCTCCATCATCATCCAACTCATCATTTCAGTCTCTTATTCTATCTTTTGAAAACCCCCCAAACTCACCTCCTACTATCAACACCCCCCAATTGGGAAACTTACATGTCTCAACTCAAATTCCAAAAGGGTCACCAAAAAATGAAAACTTGGAAACAAAAACCTCACAAAACAAAAGGTCTAGAAATCATGGTCAAGATCATATCATGGCTGAGAGAAAACGTAGAGAAAAACTCAGCCAAAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAATCTTAAGAAGATGGACAAAGCTTCTGTATTAACTGACTCTATCAAATACATGAAAGAGCTTAAACAGCGTTTGGAAGTTTTGGAAGAACAGAGCAAGAAAACAGAAGCAGAGTCAGTGGTTGTTATGAAAAAACAAGACCTATGCATCAATGATGATAATTCATCATGTGATGAGAGTATTGAAGGTGCTGTTGATGCCAAAGAATCAGTCTTACAAGTGGAAGCAAGAATGTCAGGGAAAGAGATGCTGATAAGGATTCATTGCCAGAAGCACAAGGGAGTTCTTGTTAAAATCATGACTGAAATTCAAAGCTTTCAATTATTTGTTGTCAATAGCAGTGTCTTACCCTTTGGAAATTCTATCCTCGACATTACCATAATTGCTCAGGTGGGCGAAGGGTACAAGTTGAGCACAAAGGAACTTGTGAGGAACCTACGCATGGCAACATCCCCAGATGAATGCGATGCTTTTCTAGCATGTGATAATGCTCCAGCGCACAGTGTACGTTCTTCAGAAGATGATATTATTGTGGGATTTGGTAGGAATATTTTCATGGATTTTGGTGATAAATAG 1173 0.3725 MEEINNTPMNISDLNMDEYNLFPEECNLNFLDADEEEFLSHDIVTTTVFQEQQTQQHPLTLESTTLNNSFTDETNFQSFNFDFEIERPIKQLKTTNDSDKITETLSPKLSPSSSNSSFQSLILSFENPPNSPPTINTPQLGNLHVSTQIPKGSPKNENLETKTSQNKRSRNHGQDHIMAERKRREKLSQSFIALAALVPNLKKMDKASVLTDSIKYMKELKQRLEVLEEQSKKTEAESVVVMKKQDLCINDDNSSCDESIEGAVDAKESVLQVEARMSGKEMLIRIHCQKHKGVLVKIMTEIQSFQLFVVNSSVLPFGNSILDITIIAQVGEGYKLSTKELVRNLRMATSPDECDAFLACDNAPAHSVRSSEDDIIVGFGRNIFMDFGDK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03582 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Trre15g03582 390 PANTHER BHLH TRANSCRIPTION FACTOR 45 349 - -
Trre15g03582 390 SMART finulus 177 226 IPR011598 GO:0046983
Trre15g03582 390 Coils Coil 210 237 - -
Trre15g03582 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 237 IPR036638 GO:0046983
Trre15g03582 390 MobiDBLite consensus disorder prediction 161 177 - -
Trre15g03582 390 MobiDBLite consensus disorder prediction 98 160 - -
Trre15g03582 390 Gene3D - 156 237 IPR036638 GO:0046983
Trre15g03582 390 MobiDBLite consensus disorder prediction 94 177 - -
Trre15g03582 390 Pfam Helix-loop-helix DNA-binding domain 175 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03582 Trre-Chr15 43526377 43528582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03582 87 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.176 1.25e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g03582 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03582 - - gmx:100788128 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03582 15 43526377 43528582 Trre15g03582 15 43526377 43528582 ECH