Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03577 ATGGCCGGTTTGGATTTAGGAAATGCATCAAGCTTTATGCAAAACCTTCACAGACAAAACTTGCACATTCAGCAACAACAACAGCAACATCATCAACACCAACACGATTCTGAGGAACAGCAAGAGTCGAATCGTGTTGGTGGTGGTGGTGCAGCTCCGTTTTCATCAAACGATGAAGATGACCGAAGCCAAGGCCTGGAGCTAGGTTCAGCAGCTGGTCCAGGTGACGTGGTCGGACGCCGTCCACGCGGCAGACCACCGGGATCGAAAAACAAAGCAAAGCCGCCGGTGATCATCACCCGTGAGAGCGCCAACACTCTGAGGGCTCATATTCTCGAAGTAGCCAGCGGCTCCGATGTGTTTGAATGTGTAACCACCTACGCTCGCCGTCGTCAGCGTGGGATCTGTGTTTTAAGTGGAAGCGGAACCGTCACTAATGTAAGTCTCCGGCAACCAGCGGCGGCGGGTGGTGTTGTAACACTGAATGGAAGATTTGAGATATTGTCTTTGTCTGGATCTTTTCTGCCTCCACCAGCTCCTCCCGGAGCGACTAGCTTAACGATTTATCTCGCCGGAGGACAGGGACAGGTTGTCGGAGGAAGTGTGGTTGGTGAACTTATCGCAGCGGGCCCGGTGATCGTGATTGCGGCTTCTTTTACTAATGTAGCTTATGAGAGATTGCCCTTGGAGGAAGAGGAGCAAGTTCAGATTCAAGCAGGAGGTGGTGGTGGTTCTCAAGGCTCTGGTGGTGGTGGTGGTGGCGGCGGCGGTGGAGGAAATAACAATCCATTTCCTGATCCTTCATCTGGTTTGCCATTTTTCAATCTGCCATTGAATATGCAAAATGTTCATCAGCTGCCTGTTGATGGTTGGGCGGGAAACAATTCAGCTGCACGTCAGCCTTTTTGA 909 0.5149 MAGLDLGNASSFMQNLHRQNLHIQQQQQQHHQHQHDSEEQQESNRVGGGGAAPFSSNDEDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTTYARRRQRGICVLSGSGTVTNVSLRQPAAAGGVVTLNGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLEEEEQVQIQAGGGGGSQGSGGGGGGGGGGGNNNPFPDPSSGLPFFNLPLNMQNVHQLPVDGWAGNNSAARQPF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03577 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 221 IPR005175 -
Trre15g03577 302 FunFam AT-hook motif nuclear-localized protein 107 234 - -
Trre15g03577 302 CDD DUF296 108 191 IPR005175 -
Trre15g03577 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 238 - -
Trre15g03577 302 Gene3D - 107 239 - -
Trre15g03577 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 276 IPR014476 GO:0003680
Trre15g03577 302 MobiDBLite consensus disorder prediction 235 271 - -
Trre15g03577 302 ProSiteProfiles PPC domain profile profile. 104 240 IPR005175 -
Trre15g03577 302 MobiDBLite consensus disorder prediction 21 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03577 Trre-Chr15 43375986 43376894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03577 1 302 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.669 1.79e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03577 - - pvu:PHAVU_003G230600g 363.614