Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03576 ATGGATTCCCGCTCACCACCACCACAACAACCACCACCACAACAATCAACCATCATGGTGGGACCCACATCTTACGCTCCAACAAACACTTCCATGATCAGCCCTAATTCCTCCACCACCAACGCCACCAATCTCATGGCACCTGCCACCGCTCGATTTCCTTTCTCCTCTTCTCAACAATCGGAGCCATTCTCCGTCACTCACGACAACAACAACAACAACAACAACAACGCTCCTCCTTCCTCTCCGTCTACTCTTGCTAAGAAAAAACGTGGCCGTCCGAGGAAATACTCCCCTGACGGTAACATTGCTCTTGGTTTGGCTCCTACTCATGTTTCTTCTCCTGCCGCTGCTACCTCCGCCTCCGCCGGTGATTCTGGTAACGCTGATGCTCCTCCTAAGAAACATAGAGGAAGACCTCCTGGTTCTGGGAAGAAACAGTTAGATGCCCTTGGTGCTGGTGGGACTGGATTCACTCCACACGTAATTGTGGTGGAGTCTGGTGAGGACATTACAGAAAAAGTCATGTCCTTTTTACAGATAGGGCCTCGGACGGTTGTTATTCTTTCTGCAGTTGGTGCAATCAGCAATGTAACCCTTCGACAGCCAACATTATCTGGCGGTGTTGCAAGATTTGAGGGCCAATTTGAGATCATATCACTATCAGGTGATATGCAGCTATCTGAAAATAATGGTGAGCAAAGCAGAACAAGCAGTTTGTACGTTTCCCTTGCAGGGGCTGATGGGCGAGTTTTGGGTGGTGCAGTTGCTGGAATGCTAACTGCAGCGTCGGCTGTACAGGTCATTGTGGGTAGCTTTATAATGGATCAGAAAAAGTCAAGCTCGAGTATGGTGAAATCTGGGACTTCTTCAGCACCAACTTCCCAAATGTTGAACTTCGGAGCTCCTACGACTCCAACTAGTCCCACCTCTCAAGGGCCTTCAACCGAGTCCTCGGAAGAAAATGATCACAATAGTAACTTTAGTAGGGGTCCTGGAATCTACAATAATGCTAATCAACCTGTTCATAATAATATGCAGCAGATGTACCACCATCCCCTATGGGCTGGTCAATCTCATCAGTGA 1086 0.4834 MDSRSPPPQQPPPQQSTIMVGPTSYAPTNTSMISPNSSTTNATNLMAPATARFPFSSSQQSEPFSVTHDNNNNNNNNAPPSSPSTLAKKKRGRPRKYSPDGNIALGLAPTHVSSPAAATSASAGDSGNADAPPKKHRGRPPGSGKKQLDALGAGGTGFTPHVIVVESGEDITEKVMSFLQIGPRTVVILSAVGAISNVTLRQPTLSGGVARFEGQFEIISLSGDMQLSENNGEQSRTSSLYVSLAGADGRVLGGAVAGMLTAASAVQVIVGSFIMDQKKSSSSMVKSGTSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPGIYNNANQPVHNNMQQMYHHPLWAGQSHQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03576 361 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Trre15g03576 361 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Trre15g03576 361 MobiDBLite consensus disorder prediction 1 15 - -
Trre15g03576 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Trre15g03576 361 CDD DUF296 159 273 IPR005175 -
Trre15g03576 361 MobiDBLite consensus disorder prediction 281 341 - -
Trre15g03576 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 274 - -
Trre15g03576 361 MobiDBLite consensus disorder prediction 16 84 - -
Trre15g03576 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 327 IPR039605 GO:0003680
Trre15g03576 361 MobiDBLite consensus disorder prediction 1 153 - -
Trre15g03576 361 ProSiteProfiles PPC domain profile profile. 155 295 IPR005175 -
Trre15g03576 361 Gene3D - 160 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03576 Trre-Chr15 43357144 43363361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03576 87 361 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 48.077 2.49e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03576 - - gmx:100789717 387.111