Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03575 ATGGCTAGAAAAAAGGTGAAACTTGCTTTCATTGTTAATGATGCTACTCGAAAAGCATCATATAAGAAAAGAAAAATGAATCTATTGAAGAAGGTTGATGAAATAAGCACTCTGTGCGGAATTGAAGCATGTGCCATAATATATGGTCCTCTTGAGCCACAACCTGATATTTGGCCATCCCCTTTGGGAGTCCAAAATGTGCTCGCAAAATTCAGATCACTGACTGAATTTGAGCAGAATAGGAACAAATTGAATCAAAAGGATTTTTTGAAACAAAGAGTTTCCAAAGCCCAAGAGCAACTTATGAAACTGAGGAGAGAAAATATGGAGAACGAGATGAGAGTGCTCATGTATAATTCTATTCCATATAATAGAATTATGCGCGAAACTATATCAATAGATGAATCAAATGTTCTTTATCGGTTGATTGACCAAAATTTAAGGGACATAGATAGAAGATTGGAAGCTGGCAATAATAATATTGGGCAAAGTGAAATAATGTCTGCTCCAACTCCAGGCCAACTTCAAATGACACCACCGCTGCCGGCGGCACCAACAACAACAACGAACAATGAAGAACTAACTATGAGGGTGGATCATGGTCATACTGGGTTGACTATGAATGATGCTGACATCATGCAAAGACAAATGGATATGGACTTGATGCTGAATGGAAATGGGGATGATGCAATTTCATTTGGTCATCTTCTTGATGCAAATCTTCAAAATGGATTTTGGCCTAATATGCTTCCTTAA 756 0.377 MARKKVKLAFIVNDATRKASYKKRKMNLLKKVDEISTLCGIEACAIIYGPLEPQPDIWPSPLGVQNVLAKFRSLTEFEQNRNKLNQKDFLKQRVSKAQEQLMKLRRENMENEMRVLMYNSIPYNRIMRETISIDESNVLYRLIDQNLRDIDRRLEAGNNNIGQSEIMSAPTPGQLQMTPPLPAAPTTTTNNEELTMRVDHGHTGLTMNDADIMQRQMDMDLMLNGNGDDAISFGHLLDANLQNGFWPNMLP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03575 251 Coils Coil 80 114 - -
Trre15g03575 251 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre15g03575 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Trre15g03575 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g03575 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre15g03575 251 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre15g03575 251 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Trre15g03575 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre15g03575 251 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Trre15g03575 251 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Trre15g03575 251 PANTHER MADS BOX PROTEIN 3 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03575 Trre-Chr15 43258439 43259194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03575 1 188 Type I MADS-box Gene Family AT5G48670 46.392 2.25e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre15g03575 SRF-TF 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03575 - - mtr:11434260 220.32