Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03569 ATGCCAGTTCCACTTGCTCCCTACCCAACTCCACCACCAGCTCCATATACACCACCTCCAACAAATGGTGGACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTAATGTATCCAGTTGGAGCTACTTCTGTATGCTGTGCTGTTTGCAGTGCTGTCACAGCAGTGCCGCCGCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTTATGTACATCCGCGGAGCGACAAGCGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTTGCACATGTCAATTGTGGTAACTGCAGGATGCTACTTATGTACCAATATGGAGCAAGATCCGTGAAGTGTGCAGTTTGCAATTTTGTCACCTCAGTTGGGGCCTCAGCAAGCACTACTGAGCAGCAGAAATTCAGCACCTAA 447 0.4765 MPVPLAPYPTPPPAPYTPPPTNGGQSQLVCSGCRNLLMYPVGATSVCCAVCSAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFST 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03569 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Trre15g03569 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Trre15g03569 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
Trre15g03569 148 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Trre15g03569 148 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Trre15g03569 148 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Trre15g03569 148 PANTHER PROTEIN LSD1 16 57 IPR040319 -
Trre15g03569 148 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03569 Trre-Chr15 42993481 42994805 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre15g03569 zf-LSD1 9.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03569 - - cave:132174962 257.299