Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03567 ATGGCTGCTGCATCTGGGATGACTGATGAGGAAAAACAAGTTTCTTCAATTGACAACATCCATCCGAGGCTGGATGTCTATGTGTGGGACATGGATGAGACCCTTATACTGCTCAACTCTTTGCTGAAATCATCATATGCTGAGGCTTTCAACGGTCTGAAGGATGTGCAGAAAGGTGTTGAGCTCGGGAAGATGTGGGAAAATCTCATTTTGAAAGTGTGCGATGATCATTTCTTCTACGAACAAATTGAAAATTACAATCAGCCATTTCTTGATGTTCTGTCCAAATATGATGATGGGAGGGACCTATCTGATTACGACTTCAACCAAGATGAATTAGGCCCCCCACATGATGATGCCAACAAAAGAAAAATTGCATACAGGCATCGAATTATATCCCAAAAATACTTGCAGGGCTTACATAATATTTTAGATCACGAGACAATAAAAGTATGGGATGATTTGTATGAAAAAACTGATGAATATACTGACAAATGGCTTTCATCAGCACGGACCTTTTTGAAGGAGTGTTCTGGTCAAAATAAAGATGCGGTATCTTCAATTGCTTATGCTAACACAAGCACTGACTCAACCAATGCAAAGCGTCAGCATGTAAATGTTTTAGTGACATCTGGATCGTTGATACCATCTCTTGTAAAATGCTTGCTCTTTCATCTGGACAGCTCAATAACACATGAAAATGTGTATAGCTCTTGGGATGTGGGGAAAGTTCAATGTTTCCGATGGATCAAGGAGCGTTTCAACCATCCCAACGTTCGCTTTTGTGTAATTGGAGATGGATGGGAAGAGTGTGAAGCTGCCGAAATCATGAGATGGCCATTTATTAAGATTGACCCTCGGCCAGGAAAACCTCATAGGTTCCCTGGCCTCACATCCAAAACAGTTGGCCACTATGTTTCTGTGGTGTATCCAGACAACGAGAATGATGAAGAATGA 957 0.4117 MAAASGMTDEEKQVSSIDNIHPRLDVYVWDMDETLILLNSLLKSSYAEAFNGLKDVQKGVELGKMWENLILKVCDDHFFYEQIENYNQPFLDVLSKYDDGRDLSDYDFNQDELGPPHDDANKRKIAYRHRIISQKYLQGLHNILDHETIKVWDDLYEKTDEYTDKWLSSARTFLKECSGQNKDAVSSIAYANTSTDSTNAKRQHVNVLVTSGSLIPSLVKCLLFHLDSSITHENVYSSWDVGKVQCFRWIKERFNHPNVRFCVIGDGWEECEAAEIMRWPFIKIDPRPGKPHRFPGLTSKTVGHYVSVVYPDNENDEE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03567 318 SFLD Haloacid Dehalogenase 25 285 - -
Trre15g03567 318 SUPERFAMILY HAD-like 23 292 IPR036412 -
Trre15g03567 318 FunFam Eyes absent homolog 25 294 - -
Trre15g03567 318 Gene3D - 25 290 IPR038102 -
Trre15g03567 318 PANTHER EYES ABSENT 18 306 IPR028472 GO:0004725
Trre15g03567 318 NCBIfam EYA conserved domain 25 302 IPR006545 GO:0007275
Trre15g03567 318 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 25 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03567 Trre-Chr15 42959640 42962191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03567 9 316 Protein tyrosine phosphatase (PTP) family AT2G35320 57.143 2.31e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03567 - - tpra:123881555 622.854