Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03564 ATGGGTTGCACGGTCAGAGAAAAACACATCAGAGCTAATCGCCGACCACGATCTGCGGCGGCGAAAACTGATTCCGATTCTTCCGATAACAAAGATGCAATTTCCAAATCCATTGCTGAGTCTGGTCTCAAACCTTTCAAATACGATATTTCTTCTTCTAACGGTCTTATTCCTCTTCCTAATCCAAACCCTAATTCGGATGAATCTGGTTGGGGTTATTGTACTGAGGAACAATTGGAAGAGATTCTTTTGAAGAATTTGGAATTTGTTTATAATGAAGCTGTTTCAAAGATTGTTGCTTTAGGTTATGAGGAAGATGCTGCTTTGAAAGCTATATTGAGGAATGGTCATTGTTATGGTGGAATGGATGTTTTGACGAATATTTTGCATAATTCTTTAGCGTATTTGAATAGTAACGGTAGTGTTGTTTCTATTGGTGCTGGTTTTGGTGGTGGTGGAGATGGTAGTAATGGGAATTCTGATGAGGCTGAGCTTGTTTTCTCAGATTTGAGGCAGTTAGAGGAATACTCTTTGGCTGGTATGGTTTGTTTGTTGCAACAGGTTAGACCTAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGCTTATGAGTGATCTTCATGTGGGGAAAGCTAGTACTATGGAAATTCCTGTGCCGGGGAGTGGGGGCGCTACTCGCACGCCTGCTATTGTTGAGTCTGGTCAGTCGGGTCGCAGTTCGGTTGGTGTTAGGGCTCCTCCCTTGTGTAGGTTTCATGGAGGGTGGGGATTTGGAAATGGGGATTATCCTGTCAATGGGATATTTTCGTGTGGTCCGGATTTGCAAAGAGAGATTGAATTCCCGAAAAGGTTTGATCTTTCGCCTACGATGAAGGTCTTGTTGAAGAGAAATGTTACAATGTTTGCTGCTGGTTTTAGGGCAAACACCAAACAGCTGCAGACACAGGGGAAGGTGAAGGCCAATGTTCCCGGTGGTCGTAGTGCTGTGTCTGGTTTGGATTCTCCGGTTGTGTCCTCTGGGGCTGAAGTCACGGCTGATCAGTGTGGACATTCTCGGTTTCCTGATAACCAAGATGCTGTGAACTCAGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTAAGTATATTTCACCAGATAAAGGATTTGGAGAAACAAGCTAAGGAGCGAAAAGAATGGGCTCATCAGAAAGCAATGCAAGCGGCAAAGAAGCTAAGCAGTGATTTGACTGAGCTGAAAACGTTACGGATGGATAGAGAGGAAACTCAGAAATTGAAGAAAGGGAAACAAGCACTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCTTTGAGAAAGGCTAGCGGTCAAGTGGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACTGAGAATGCGGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCGAAAAGGGAGAAAAAATGGTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAAAAGGAGATTTCCAATGAGAAAGAGAAGATATTGGAGGCACAAGAAGTGCTGGCTCAGAATACACAGCGTCGAAAAGAAGCTGAGGTTAAATGGAAGGAGGAGTTGAAGGGTCAAGAAGATGCCTTGGCACTAGTTGAGGAGGAGCGCCGTGCCAAGGAAGCAGCTGAATCAAACAATAAGAGGGGGTTTGAGGCTTTGCGTCTGAAGATAGACATAGATTTCCAGCGCCACAAGGATGATCTAAGTAGACTTGAGCATGATCTTTCGCGCCTTAAAGCGTCTGTTCAATCTGCTGTGCTGCACCATCAATCAAATACTACACCTATAAGTGACTTTGAAGGTACAAAGCCCCAAAGAGAGACAATTGCTAAGCTGCTTCTGGAATTGGATAGCCTGGAGGATTTATCAGAAAATGAAGTTAGTAACAATAGAGAATGCATTATATGCATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCTCACCAAGTCATGTGTGCTAAATGCAGCGATGAGTATGGAAAAAAGGGCAAGGTTGCTTGTCCTCGATGCCGAGTTCAAATACAACAGAGAATCCGTGTATTTGGGGCATGTTCTTAG 2190 0.4365 MGCTVREKHIRANRRPRSAAAKTDSDSSDNKDAISKSIAESGLKPFKYDISSSNGLIPLPNPNPNSDESGWGYCTEEQLEEILLKNLEFVYNEAVSKIVALGYEEDAALKAILRNGHCYGGMDVLTNILHNSLAYLNSNGSVVSIGAGFGGGGDGSNGNSDEAELVFSDLRQLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTMEIPVPGSGGATRTPAIVESGQSGRSSVGVRAPPLCRFHGGWGFGNGDYPVNGIFSCGPDLQREIEFPKRFDLSPTMKVLLKRNVTMFAAGFRANTKQLQTQGKVKANVPGGRSAVSGLDSPVVSSGAEVTADQCGHSRFPDNQDAVNSVLSKFRDLNLDENLEFVAEDQKDEVIVSIFHQIKDLEKQAKERKEWAHQKAMQAAKKLSSDLTELKTLRMDREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKREKKWLKKLLAWEKQKAKLQKEISNEKEKILEAQEVLAQNTQRRKEAEVKWKEELKGQEDALALVEEERRAKEAAESNNKRGFEALRLKIDIDFQRHKDDLSRLEHDLSRLKASVQSAVLHHQSNTTPISDFEGTKPQRETIAKLLLELDSLEDLSENEVSNNRECIICMKDEVSIVFLPCAHQVMCAKCSDEYGKKGKVACPRCRVQIQQRIRVFGACS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03564 729 ProSiteProfiles Zinc finger RING-type profile. 675 715 IPR001841 -
Trre15g03564 729 MobiDBLite consensus disorder prediction 17 33 - -
Trre15g03564 729 CDD RING-HC_MIP1-like 673 724 - -
Trre15g03564 729 SUPERFAMILY RING/U-box 674 721 - -
Trre15g03564 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 726 IPR013083 -
Trre15g03564 729 Pfam Zinc finger, C3HC4 type (RING finger) 672 720 - -
Trre15g03564 729 MobiDBLite consensus disorder prediction 1 33 - -
Trre15g03564 729 PANTHER OS05G0141500 PROTEIN 1 724 IPR046934 -
Trre15g03564 729 Coils Coil 455 496 - -
Trre15g03564 729 Pfam Family of unknown function (DUF6592) 86 212 IPR046527 -
Trre15g03564 729 Coils Coil 511 587 - -
Trre15g03564 729 SMART ring_2 675 714 IPR001841 -
Trre15g03564 729 Coils Coil 603 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03564 Trre-Chr15 42902368 42907440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03564 675 725 C3H Transcription Factor Family AT1G73950 43.137 4.15e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03564 - - gmx:100777787 988.023