Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03561 ATGGCAGAGACATCACTGCCACCAGGTTTTCGTTTCCGTCCAACCGATGAAGAACTGATTGGATACTATCTAAAAAGAAAAGTGAAAGGACTTGAAATTGAGCTTGATGTTATCCCAATGATTGATTTTTACAAATTTGATCCATGGGAGTTACCCGATAAATCATTTCTACCGAAACGAGATTTAGAATGGTTTTTCTATTGTCCGCGAGATCGAAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAACTGGGTACTGGAAAGCTACCGGAAAAGAGAGAGAGATTGTGTGCGAGTGTGCTTCATCCACCATCACAGGTTACTGCAAAACACTTGTTTTCTATATTGGAAGGGCCCCTTTAGGGGATAGAACTAATTGGATCATGCATGAGTATCGTCTCGCTGATGATTTTAGCCAAGACTTTAAGGGTGTTTTTGCTTTGTGTCGAGTTATTAAAAAGAATGAGAAGAGCAAGAGGGCAGAAACAAGTTCCAATGATGTTACTTCTCAAACAAGTTACCAGAATAATGACAGTGGATCACAAAATATGGCTCCAATTGCTGAGTTTAACAATGTATCAATAGAAACTAATCCTTCAAACTTCTGGATCTCACCTGATATGATTCTTGATTCTTCAAAGGAGTATACTCAAGTACAAGATGCAGTGTCTGAATATTTTCCAAGGTGTGACTCGCCACGACAATCATTGGAACATACAACAATTTCACCTAGTTTATCATACTCAAATTTTAACGGCGAAATTGAATTTTCTGATAATACAAGTCAAATTGGATGCATGTCACCTTACTCAAGTCAGGGAAATTTCATGGACTATTATGGAAATTGGAATGTTCCTTATGAAGTTTATGATCAGATTAACTCTGTCTCCTATCTAGAGCCTTTCTAA 915 0.377 MAETSLPPGFRFRPTDEELIGYYLKRKVKGLEIELDVIPMIDFYKFDPWELPDKSFLPKRDLEWFFYCPRDRKYPNGSRTNRATKTGYWKATGKEREIVCECASSTITGYCKTLVFYIGRAPLGDRTNWIMHEYRLADDFSQDFKGVFALCRVIKKNEKSKRAETSSNDVTSQTSYQNNDSGSQNMAPIAEFNNVSIETNPSNFWISPDMILDSSKEYTQVQDAVSEYFPRCDSPRQSLEHTTISPSLSYSNFNGEIEFSDNTSQIGCMSPYSSQGNFMDYYGNWNVPYEVYDQINSVSYLEPF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03561 304 FunFam Nac domain-containing protein 86 15 159 - -
Trre15g03561 304 MobiDBLite consensus disorder prediction 166 185 - -
Trre15g03561 304 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre15g03561 304 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 213 - -
Trre15g03561 304 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Trre15g03561 304 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Trre15g03561 304 MobiDBLite consensus disorder prediction 162 185 - -
Trre15g03561 304 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03561 Trre-Chr15 42893316 42894788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03561 1 281 NAC Transcription Factor Family AT4G17980 55.822 7.60e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g03561 NAM 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03561 - - mtr:11415472 507.294