Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03535 ATGGTTTGTACTGCCAATGATTTACAAGAATGGAAAGATTTTCCAAAAGGACTCAAGGTTCTTCTCCTTCAGGAAGACAACACTTCTGCTTCTGAGATAAGAACAAAACTTGAGGCCATGGACTATAATGTTTCTACATTCTGTGATGTGAACGAAGCCTTATCAGCAATCTCAAGTAAACCTGAAGGCTTCCATATAGCCATAGTGGAGGTGAGTTCAAGAAGTTGCGAGGGAGGTTACAAATTTTTTGAGAATGCCAAGGACTTGCCGACCATTATGACGTCAAACAACGATTGTCTGAACACCATGATGAAGTGCATAGCGCTTGGAGCAGTAGAGTTCCTCAGCAAACCACTCTCCGAGGAAAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGTCTCCATTTTGCAGCTCCAAACGGACAACGAACAACATGAAAGTAGAGCCTCAGTTGAGTTAGAGAAAGTATCCCAGTTTTCTGACGAAGACCTTGAGCATTATCCGGCTCCTTCAACCCCACAATTGAAACAGGTGGAAATATTACTAGATGATGGGGATTGTCAAGAGCAGACTAATTGCTCTACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATTCGTCGAAACTACTTGTGAAAATATGAATGCTGAAAGTACTCCTCAACAAAGGAAATCTGAAGTTACTCTGGTTCAAAAGGAAGCGGAGGAATTTGCCGACGCTTCTAAGTGTGAGAGTGTTGTTTCACCACATCCACAAAATGAGAAGGTTCTCAATAATAGTGAAAGTAATACAACGTCTGCGAATAAAGTAGGTGTTCGTAGTCATAAATGCGAGATCAAAGCTAATCGGAAGAAAATGAAAGTAGACTGGACGGCTGAGCTACACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCATGCAATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTGCCGAAGCAAGAAGATCGGAAATGGCTAAATCAAAGAGATCCAACACAAAGGAGCTATTGTATTCAAAGGCCAATTATGCCTGGTCCTCCATCATATTATTCTAACCACACCCTTCCTCCACCTCCTTTATATCCTATGTGGGGACAACCTGGAACTCAAACGGCTGGAATGCAGGTTTGGAGCCCTTCTGCTTATCCCTTGTGGCAGCCTGCAGAAGCTTGGCATTGGCAACCATTTCCGGCGATGCATGCAGATACATGGGGCACCCCGGTGTTACCACCACCTCAACCTCCTTGCTATTCCTATTCTCAGAATACACCTGCAGTGAGTAATGCTAATGCAGTAGATTACATGTTTGACATGCCCCAAAGTTCCTTTGACGATTATCCGGCAGAGGAGGTTATCGACAATGTTGTGAAGGAGGCAATAAGTAAGCCATGGCTACCTTTGCCGATAGGGCTCAATCCTCCTTCCACGGATAGTGTGTTGGCTGAGCTTTCCAGGCAAGGCATTCCCAACATCCCTCCAAGCAACAATGGTTCTGTTCCCAATTGA 1659 0.437 MVCTANDLQEWKDFPKGLKVLLLQEDNTSASEIRTKLEAMDYNVSTFCDVNEALSAISSKPEGFHIAIVEVSSRSCEGGYKFFENAKDLPTIMTSNNDCLNTMMKCIALGAVEFLSKPLSEEKLRNIWQHVVHKAFNAGVSALSESLKPVKESVVSILQLQTDNEQHESRASVELEKVSQFSDEDLEHYPAPSTPQLKQVEILLDDGDCQEQTNCSTEKESGEHDGESKFVETTCENMNAESTPQQRKSEVTLVQKEAEEFADASKCESVVSPHPQNEKVLNNSESNTTSANKVGVRSHKCEIKANRKKMKVDWTAELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQEDRKWLNQRDPTQRSYCIQRPIMPGPPSYYSNHTLPPPPLYPMWGQPGTQTAGMQVWSPSAYPLWQPAEAWHWQPFPAMHADTWGTPVLPPPQPPCYSYSQNTPAVSNANAVDYMFDMPQSSFDDYPAEEVIDNVVKEAISKPWLPLPIGLNPPSTDSVLAELSRQGIPNIPPSNNGSVPN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03535 552 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Trre15g03535 552 SUPERFAMILY Homeodomain-like 308 366 IPR009057 -
Trre15g03535 552 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Trre15g03535 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 306 365 IPR017930 -
Trre15g03535 552 MobiDBLite consensus disorder prediction 265 293 - -
Trre15g03535 552 Gene3D - 18 141 - -
Trre15g03535 552 Pfam Myb-like DNA-binding domain 312 361 IPR001005 -
Trre15g03535 552 SUPERFAMILY CheY-like 16 134 IPR011006 -
Trre15g03535 552 FunFam Two-component response regulator-like APRR2 17 142 - -
Trre15g03535 552 NCBIfam myb-like DNA-binding domain, SHAQKYF class 309 364 IPR006447 GO:0003677
Trre15g03535 552 Gene3D - 305 367 - -
Trre15g03535 552 FunFam Two-component response regulator 305 368 - -
Trre15g03535 552 MobiDBLite consensus disorder prediction 270 293 - -
Trre15g03535 552 MobiDBLite consensus disorder prediction 533 552 - -
Trre15g03535 552 SMART REC_2 18 128 IPR001789 GO:0000160
Trre15g03535 552 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 545 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03535 Trre-Chr15 42319127 42323399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03535 1 549 Response Regulator Gene Family AT4G18020 48.129 1.86e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre15g03535 Response_reg 6.8e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03535 - - psat:127074291 899.042