Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03491 ATGGCACTCTCTCATTTGTGTATTGTTCTCCTTGCCACCTTTCTTTTCATGCAAACTATTGCAGATACTTCATGCACCGACTGCTTTGTTCAATCTCGTGCATCATTTTACCCAAACTCTGACGAAAAAGGCACAGATGCTGGTGCATGTGGATTTGGGTCCTTTGGTGCTACCATTAATGGCGGAGATGTATCGGCTGCATCTAGTCTTTATCGAGATGGAGTTGGCTGTGGCGCTTGTTACCAGGTGAGGTGTACCAACAGTGCTTATTGCTCAGGCAACGGTGTCACTATAGTTTTAACTGACCAAGGCTCAGGAGATAACACTGATTTCATTCTTAGCCAACGAGCCTTTGGTGGAATGGCTCAAAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGTGTAGCTGATATTGAATACAGACGTGTTTCATGTAACTACCCGAACAAAAACATTACAATTAAGATCGATGAAAGCAGCAGCAACCCTCATTACTTGGCTTTTGTCTTATGGTTTCAACAAGGGAAGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTCTGCAAGTTACTGGATCGGAATCATGGCGCTGTCTGGACTACTACATCTCCACCAAGTGGACCATTGTCTTTAAGGATGTTGTTTAGTACTGACGATGGAGACGATACATGGATCGTTCCGGTTAATAACATACCAGAAGACTGGAAGGCTGGAGAAACATACGACTCAGGAGTTCAAGTAGACCAGTAG 765 0.4418 MALSHLCIVLLATFLFMQTIADTSCTDCFVQSRASFYPNSDEKGTDAGACGFGSFGATINGGDVSAASSLYRDGVGCGACYQVRCTNSAYCSGNGVTIVLTDQGSGDNTDFILSQRAFGGMAQNKDAAASLLALGVADIEYRRVSCNYPNKNITIKIDESSSNPHYLAFVLWFQQGKRDITAVQLCETQNFVCKLLDRNHGAVWTTTSPPSGPLSLRMLFSTDDGDDTWIVPVNNIPEDWKAGETYDSGVQVDQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03491 254 PANTHER EXPANSIN-B3 12 251 - -
Trre15g03491 254 Gene3D - 148 252 IPR036749 -
Trre15g03491 254 Gene3D - 17 147 IPR036908 -
Trre15g03491 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Trre15g03491 254 Pfam Lytic transglycolase 67 140 IPR009009 -
Trre15g03491 254 SUPERFAMILY Barwin-like endoglucanases 16 150 IPR036908 -
Trre15g03491 254 Pfam Expansin C-terminal domain 153 237 IPR007117 -
Trre15g03491 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Trre15g03491 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Trre15g03491 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Trre15g03491 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre15g03491 254 CDD DPBB_EXLB_N 30 146 - -
Trre15g03491 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Trre15g03491 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03491 Trre-Chr15 41735489 41737568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03491 1 250 Expansin Gene Family AT4G17030 42.629 7.62e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03491 - - gmx:100794009 441.039