Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03468 ATGAAGTGTTTCTTCTTCAAAGAAAAATGCAAATCTGCCCCAGAATTACAGAACAAGAAGAACAAGAAGAACTCCGCTTTCAACCGCGCAACAAACTCAACTGGCTCTATATCTTCTCCACGGAGTGTGAAGGATTTGTATAGAGAAAAGGAACATACTTTCAGAGTTTTCAGTCTTCAAGAATTGAGAGATGCTACCAATGGTTTCAATAGGATGCTCAAAATTGGTGAAGGAGGTTTTGGAAGTGTTTATAAAGGATCAATTTTACCACCAAATGGACAAGGTGATCCAATTATAGTTGCTATCAAAAGGCTTAACACTCGTGGATTTCAAGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATATTGCTCTGTAGACGGAGAAAGAGGAATCCAACGGCTATTGGTGTATGAGTTCATGCCAAACAGGAGCTTGGAAACTCACCTTTTCAGTAAAACTTTACCAACCCTTCCATGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTGAAGGATTAGCTTATCTGCACGAGGGATTGGAGATACAGGTGATCTACCGAGATTTCAAATCTTCGAATGTCCTATTGGATGAGGATTTTCATCCGAAGCTCTCAGATTTTGGTCTTGCAAGGGAAGGGCCACAAGGGGATCAGACTCATGTATCTACTGCGGTAGTTGGGACACAAGGATATGCCGCGCCAGAGTATATTGAAACAGGTCATCTCAAAGTTCAGAGTGACATGTGGAGTTTTGGGGTTGTACTCTACGAAATCCTCACTGGAAGACGATCATTAGAAAGGAACCGTCCAACAGCTGAACAGAAGCTATTAGATTGGGTTAAACAATATCCTGCTGACAGTAACAGATTCAGCATAATTATGGACCAGCGTCTTAGGAACCAATATCCGATCGCTGCAGCTCGCAAAATAGCAAAGTTAGCCGATAGTTGCTTGAAGAAGAATGCAGAAGATAGACCATCTATGAATCAGATAGTGGAAGGGTTGAAACAAGCATTGCAATATTCGGAAATGTCAAGCACTCCTCACGATAATGCTGAATCGTCTCGGTCTAAATTGGTTCAAAGAAGTAAATAG 1140 0.4123 MKCFFFKEKCKSAPELQNKKNKKNSAFNRATNSTGSISSPRSVKDLYREKEHTFRVFSLQELRDATNGFNRMLKIGEGGFGSVYKGSILPPNGQGDPIIVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLETHLFSKTLPTLPWKTRLEIMLGAAEGLAYLHEGLEIQVIYRDFKSSNVLLDEDFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSNRFSIIMDQRLRNQYPIAAARKIAKLADSCLKKNAEDRPSMNQIVEGLKQALQYSEMSSTPHDNAESSRSKLVQRSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03468 379 Gene3D Transferase(Phosphotransferase) domain 1 155 376 - -
Trre15g03468 379 MobiDBLite consensus disorder prediction 16 41 - -
Trre15g03468 379 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Trre15g03468 379 PANTHER OS01G0588500 PROTEIN-RELATED 28 354 - -
Trre15g03468 379 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Trre15g03468 379 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 364 - -
Trre15g03468 379 MobiDBLite consensus disorder prediction 357 379 - -
Trre15g03468 379 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03468 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Trre15g03468 379 CDD STKc_IRAK 75 352 - -
Trre15g03468 379 MobiDBLite consensus disorder prediction 19 41 - -
Trre15g03468 379 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Trre15g03468 379 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03468 Trre-Chr15 41296121 41299237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03468 3 350 Glycoside Hydrolase AT3G07070 43.575 8.22e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g03468 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03468 - - gmx:100786966 654.44