Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03436 ATGGGGAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCCTGTGGATCTCGATGGAGAACAAAGGGAACACTTGCAAATTATACTCCCTTACATGCTCGGACAGAACCTGTCAATTATGACGATCAAAGAGTTTCCAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTTAAATTGGTCAAACGAAAGAAGAACCATGATAATACTTATGCTGCATCTGGAGAGTTCACTCCCAAATATAATCAAGGATTCCAAAAGGCTGCCGATGAGGATACAAGCAATAGATCAAGTTCCGGGTCAGCCATCTCTAATTCAGAAAGCTGTGTTCAATTTTGTGGCACCGATGCTAGTGATTTGACAGGTCCTTCGCAGTCAGTGGTCTGGGATACCGCAGTTCCTTCGAAGAAGAGGACATGTGCAGGTCGTCTGAAGCATTCTTCTGTTGAGAAGCTCACAAAAGACTTATGTACTATTCTTCATGAACAACAACAGTCTTGTTTCTCCACTTCTTCTGAAGAGGAACTTCTTTTTGAAAGTGAAACGCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATACCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCTGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCATGCTATGGTTCGATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCAAAGAATGCAACAGGAGCAATTTGAGAGGGAGAAGTCTCAGCTTGAAAAAATAGAAGTTCTTGGAAATCATGATTCACCACTGTGTATAATAGATTTAAATGATGTAGTCAACTATGAGGAATTTTCAAGAAACTTGACAAATGAAGAACAGCAGCAATTACTGAAATATCTCCCTGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGATTTAACCTATTTTCAGAAACTTCTCGGAGAAGGTGTCCTCGATATTTCTTTGTTGGGGGAAAACCCTGAAGACTGCAAGACGTTGAAAAGGCTTGCATTGTCTAATCTGTCAAAGTCAAAATGGAAAGGTGGCATCAAAGCTGAAAAATATGATGATATGGAATCTCCTGCCGTAGCATCAAGTAATGTAGCGAATGCGAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATTGTAAAAGTTGGCTATGGCGGCAAAGAAGTTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTGCCTCGTAATGGTGGCTTGCACATGCTGGATTGTTCAAACTTTGTTGACGAGAGTTCTGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGTGCCAGTAGTAGCTCGGTATATTCTCATGTTACTCGTCCTTGA 1605 0.4156 MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPVNYDDQRVSRLKIVSLNKNKEVKLVKRKKNHDNTYAASGEFTPKYNQGFQKAADEDTSNRSSSGSAISNSESCVQFCGTDASDLTGPSQSVVWDTAVPSKKRTCAGRLKHSSVEKLTKDLCTILHEQQQSCFSTSSEEELLFESETPMVSVEIGHGSMLIRHPSSIPRDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAKVRNSAGQRMQQEQFEREKSQLEKIEVLGNHDSPLCIIDLNDVVNYEEFSRNLTNEEQQQLLKYLPVVDTAKLPDSLKIMFDSFQFKEDLTYFQKLLGEGVLDISLLGENPEDCKTLKRLALSNLSKSKWKGGIKAEKYDDMESPAVASSNVANAKRLRVSQNQNFPELKTTMRSPKRVIVKVGYGGKEVVDGSSISPKSLFALPRNGGLHMLDCSNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSASSSSVYSHVTRP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03436 534 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre15g03436 534 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Trre15g03436 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Trre15g03436 534 Pfam Asx homology domain 286 370 IPR028020 -
Trre15g03436 534 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Trre15g03436 534 Gene3D - 287 395 IPR038108 -
Trre15g03436 534 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 411 IPR044867 -
Trre15g03436 534 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Trre15g03436 534 Gene3D - 3 88 IPR013088 GO:0006355|GO:0008270
Trre15g03436 534 PANTHER OSJNBB0038F03.10 PROTEIN 1 525 IPR044589 -
Trre15g03436 534 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03436 Trre-Chr15 40558589 40563369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03436 1 510 C2C2-Gata Transcription Factor Family AT4G17570 50.566 9.18e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre15g03436 ASXH 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03436 - - psat:127074243 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00582 9 4167388 4171414 Trre15g03436 15 40558589 40563369 PCT