Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03412 ATGTCAGGCAATATTAGGATCCGCAACCAAAATGAAAGCGACTCAAATGCCAAAAGAAGAAAAGTAGTATTGGCTCTACGTGTAACCAATGCGCCAATAAATAATGGTTACAAAAGAGGAAGAGGAAGAATGACTCATATGCCTCCCCAAAGAAGAGAGGTAGATTTACCAAAGTGGGGAAATAACGGCAGGCGACGCCCATATTCTCGCAGACCAAGAAGGAATATAGAAAATCTCCTACAAATAATTGTGGAAGACAGGAATCGCGATACTATTTGTTTGGTTTGTGGTGATGGAAGAGAAGAAGAATTTATCGGTTGTGTCAATTGCCCCTCCACTTATCATACTTCTTGTGTCAATAAGCAGATTGCACTTGCTGGGAAGTTGATGTGTGGAGCTTTTGAGAAAATTGTAGACACACACACCGATGTCGTTCAAAATGTTGTTTATAGTTTCGGGTCCAATTTGACGAGGCTTAATTTTGACCGATTTTTTACATTTGTTATTGAAGAAGACGACACAGTCATTGCTGCAGCTCTTATTAGATTTAATGGGAGAGAGATTGCAGAAATGCCTTTCATTGCAACAAATGAGGCACATAGAGGAAAAGGAATTTGTCGTTTATTAATGGCGGACATTGAATCAGTAAGTTTCTAA 657 0.3927 MSGNIRIRNQNESDSNAKRRKVVLALRVTNAPINNGYKRGRGRMTHMPPQRREVDLPKWGNNGRRRPYSRRPRRNIENLLQIIVEDRNRDTICLVCGDGREEEFIGCVNCPSTYHTSCVNKQIALAGKLMCGAFEKIVDTHTDVVQNVVYSFGSNLTRLNFDRFFTFVIEEDDTVIAAALIRFNGREIAEMPFIATNEAHRGKGICRLLMADIESVSF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03412 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 156 IPR013083 -
Trre15g03412 218 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 121 218 IPR000182 GO:0016747
Trre15g03412 218 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 158 214 IPR016181 -
Trre15g03412 218 MobiDBLite consensus disorder prediction 35 70 - -
Trre15g03412 218 SUPERFAMILY FYVE/PHD zinc finger 65 131 IPR011011 -
Trre15g03412 218 Gene3D - 157 217 - -
Trre15g03412 218 MobiDBLite consensus disorder prediction 46 60 - -
Trre15g03412 218 PANTHER PHD FINGER PROTEIN 12 120 215 IPR042163 GO:0003714|GO:0045892
Trre15g03412 218 CDD NAT_SF 167 214 - -
Trre15g03412 218 Pfam Acetyltransferase (GNAT) family 164 215 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03412 Trre-Chr15 40154031 40156148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03412 120 216 PHD Transcription Factor Family AT4G14920 44.444 1.54e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03412 - - cam:101493361 122.479