Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03406 ATGGCTAATTACGATGAAGTTTCAGCTCTAAAACGCATCAAATTACATCTTCTTGGTGAATTTTCTCCACTTCCATCTCCGATTTCACAACCTTCCTTAAATTTCGATTTCGATTTTGATTTTGATTTTCAATTTCAAACTGAACAAATTCAATCTCAATCCGAATCAAACTCAAACTCAACCAATTCCGATTCATCAATTTCTATGGATCATTATTTGACACAGATTCCCGTCTTTGAATTTGATTCAAAGCCACAATTAATTGAAACTGAGAGTCCAAAACCTTTCATTTCCCATCCTGTTAACAATTCTCAACGAACTGTAGAGAAAAAGCCACAACTGAATCGAAAACCGTCGCTGAAAGTTGATTTACCGAAGAAAACAACCGAATGGATCCAGTTTGGGAAACCCGAACCGAAACCGGAGGTGGTTTTACAGAAGCAAGAAACGGTTGAGAAACAGCACTATAGAGGAGTTAGACAAAGACCGTGGGGAAAATTCGCCGCCGAAATCCGTGACCCGAACAAACGCGGGTCAAGGGTTTGGCTTGGAACATTTGAAACTGCTATTGAAGCTGCTAAAGCTTATGATCGTGCTGCTTTTAGGCTGCGTGGATCTAAAGCTATTCTCAATTTTCCTCTTGAAGTCAACGCGGCGGTGATGGCGGCGGCGGAGAATTCCGGCGACGGTGAGAGAAAACGTTGCCGTGAAGAGGAAGATGAGGTAGTAGAAGTGAAACCGGTTGTGAAAAAAGAGAAAATAACGGAACTTGATGTGAATTATTTTAAAGAGATGCCGTTAACGCCGTCAGCTTTTACTGGGTTTTGGGATAGTGATGTTAAGGGGTTCAACGTTCCACCGTTGTCGCCGTTATCATCCTTTTGTTTGTCACCTCTAGTGGCTGTGTGA 909 0.4191 MANYDEVSALKRIKLHLLGEFSPLPSPISQPSLNFDFDFDFDFQFQTEQIQSQSESNSNSTNSDSSISMDHYLTQIPVFEFDSKPQLIETESPKPFISHPVNNSQRTVEKKPQLNRKPSLKVDLPKKTTEWIQFGKPEPKPEVVLQKQETVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAAVMAAAENSGDGERKRCREEEDEVVEVKPVVKKEKITELDVNYFKEMPLTPSAFTGFWDSDVKGFNVPPLSPLSSFCLSPLVAV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03406 302 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
Trre15g03406 302 PRINTS Ethylene responsive element binding protein signature 195 215 IPR001471 GO:0003700|GO:0006355
Trre15g03406 302 SUPERFAMILY DNA-binding domain 155 215 IPR016177 GO:0003677
Trre15g03406 302 SMART rav1_2 155 219 IPR001471 GO:0003700|GO:0006355
Trre15g03406 302 Gene3D AP2/ERF domain 154 215 IPR036955 GO:0003700|GO:0006355
Trre15g03406 302 ProSiteProfiles AP2/ERF domain profile. 155 213 IPR001471 GO:0003700|GO:0006355
Trre15g03406 302 PANTHER DNA-BINDING DOMAIN 66 231 IPR044808 GO:0003700|GO:0009873
Trre15g03406 302 FunFam Ethylene-responsive transcription factor 2 154 215 - -
Trre15g03406 302 MobiDBLite consensus disorder prediction 91 114 - -
Trre15g03406 302 CDD AP2 154 213 IPR001471 GO:0003700|GO:0006355
Trre15g03406 302 Pfam AP2 domain 155 205 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03406 Trre-Chr15 40058514 40059422 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03406 1 292 AP2-EREBP Transcription Factor Family AT5G47230 46.602 6.17e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre15g03406 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03406 K09286 - gmx:100816039 286.574