Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03404 ATGGCTAACTTTGATGAAGTTTCGGCTCTTAAAAGAATCAAATTACATCTTCTAGGTGAATTTTCTCCACTCCCATCTCCAATTTCACAACCTTGCTTTGACTTTGATTTTGATTTTGATTTTCAATTTCAAACTAACCCAACCACTTCTCACTCCGAATCCAACAACTCTTCCACTTTGGATCTCTTCCAATTTGATTACAAACCTCAACCAATTGAACCTGAGAGCCCCAAGCCCTTGATATCTCATCCTCAACGAACCGTAGAGAAGAAGCAGAAATTGAATCGAAAACCGTCGCTAGAAATTGCTCTCCCGAATAAAACATCCGAATGGATCCAATTCGGAAACCCGGAGGAACCGAAGGTGGTTGTACAGAAACCGGAAGCTGATGAGAAACAGCACTACAGAGGAGTTAGAAGAAGACCTTGGGGAAAATTCGCCGCTGAGATCCGTGACCCGAACAAACGCGGGTCAAGGGTTTGGCTTGGAACTTTCGAAACGGCTATTGAAGCTGCTAAAGCCTACGACAGTGCTGCTTTTAGGATGCGTGGATCTAAAGCGATTCTCAATTTTCCACTTGAAGTCAACGAGGCGGCAACGGTAGCGGCGTCGGCGGTGGAGACCTCCGGCGACGGTGATCGAAAACGGTGCCGTGAAGAGGAAGATGTAGTATTAGAAGTGAAAAAAGAGAAAATAACAGAATTTGATGTGAACTGTTTTAAAGAGATGCCGTTAACGCCGTCAGCTTTCACTGGGTTTTGGGATAATGATGTTAAGGGGATGTTCAACTTTTCACAGTTGTCGCCGTTATCTTCGTTTTGTTTGTCACCTCTAGTGGCTGTTTGA 846 0.4433 MANFDEVSALKRIKLHLLGEFSPLPSPISQPCFDFDFDFDFQFQTNPTTSHSESNNSSTLDLFQFDYKPQPIEPESPKPLISHPQRTVEKKQKLNRKPSLEIALPNKTSEWIQFGNPEEPKVVVQKPEADEKQHYRGVRRRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSAAFRMRGSKAILNFPLEVNEAATVAASAVETSGDGDRKRCREEEDVVLEVKKEKITEFDVNCFKEMPLTPSAFTGFWDNDVKGMFNFSQLSPLSSFCLSPLVAV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03404 281 SUPERFAMILY DNA-binding domain 134 194 IPR016177 GO:0003677
Trre15g03404 281 FunFam Ethylene-responsive transcription factor 2 133 194 - -
Trre15g03404 281 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Trre15g03404 281 PRINTS Ethylene responsive element binding protein signature 174 194 IPR001471 GO:0003700|GO:0006355
Trre15g03404 281 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
Trre15g03404 281 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Trre15g03404 281 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Trre15g03404 281 PANTHER DNA-BINDING DOMAIN 93 207 IPR044808 GO:0003700|GO:0009873
Trre15g03404 281 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Trre15g03404 281 Gene3D AP2/ERF domain 133 195 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03404 Trre-Chr15 40022956 40023801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03404 96 281 AP2-EREBP Transcription Factor Family AT5G47230 56.250 2.63e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g03404 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03404 K09286 - gmx:100816039 300.827