Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03403 ATGGATGGCTTTGATTCGAAGACATTGCAGGCAACGTTGGATTGGGCTTGTGGACCGTGGAGGGCGAATTGTTCGGAGATTCAGCTGGGAGAGAGCTGCTACAAACCTAATAATGTTAAGAATCATGCTTCTTATGCTTTTGATAGCTATTACCAAAAAGAAGGGAAGGCTCCTGGAAGTTGTGATTTCAAAGGAGTTGCTATGATCACTACCACAAATCCACGTCTTTACTCTTTCCAAAGAGGGGAATGTACTCGTGGAGCTAGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACTGGTTGGGGTGAGAATGGCAATGCAAAATGGGATAATGACAAATATGATGGTCCAAAGAAAGAAAGAAGATATGACAATAACCAATCAAATCGCATTCCAGAAACTAGAGACAGAGATTCACGCTCCATAGCCCATGGCAATGAGATGAAATTAGACAACCAATCCAATCGAAGTGATAGAAGAGAGGAAAAGATGTTGCGGAGGCATGATGACGATGATAAATTTGAGGGAAGAGAAAATACCAGTCTAAGAGAAGCAAAGCGACCAAGAAGGCACGATGAAGATGAATTTGAACATCGGTTAAGAGAAGATCAAGGGGTGGTTACGATGGTAGGGAATCTGAGCCAAGAGATAACAGAAGGGAAGACAAAAGGTCAGCAAAGCGAGATGATATCGTGCTTGAGTCCAAGTCAAGGGATTCTGATGGAAGATAGGAGATCAAGAAACCACACTGAAGACGAATCTGTGCCAAGGTCAAGAGAAGATCATGATAGGAAGCAAGATAACAGATCGTGTAGAAATGATACTGATCGATCTGAATCTAAAGGAAGATACGAATCTGAACGAAGAGAAGATAAGAGGTCTCGAAGGTAA 900 0.42 MDGFDSKTLQATLDWACGPWRANCSEIQLGESCYKPNNVKNHASYAFDSYYQKEGKAPGSCDFKGVAMITTTNPRLYSFQRGECTRGARCKFSHDEQRAANTGWGENGNAKWDNDKYDGPKKERRYDNNQSNRIPETRDRDSRSIAHGNEMKLDNQSNRSDRREEKMLRRHDDDDKFEGRENTSLREAKRPRRHDEDEFEHRLREDQGVVTMVGNLSQEITEGKTKGQQSEMISCLSPSQGILMEDRRSRNHTEDESVPRSREDHDRKQDNRSCRNDTDRSESKGRYESERREDKRSRR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03403 299 Pfam X8 domain 3 68 IPR012946 -
Trre15g03403 299 SMART X8_cls 1 92 IPR012946 -
Trre15g03403 299 MobiDBLite consensus disorder prediction 111 206 - -
Trre15g03403 299 MobiDBLite consensus disorder prediction 245 299 - -
Trre15g03403 299 FunFam Glucan endo-1,3-beta-glucosidase 4 1 85 - -
Trre15g03403 299 Gene3D - 2 99 - -
Trre15g03403 299 MobiDBLite consensus disorder prediction 100 206 - -
Trre15g03403 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 95 IPR000571 GO:0046872
Trre15g03403 299 MobiDBLite consensus disorder prediction 238 299 - -
Trre15g03403 299 ProSiteProfiles Zinc finger C3H1-type profile. 70 97 IPR000571 GO:0046872
Trre15g03403 299 PANTHER BETA-1,3 GLUCANASE 4 103 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03403 Trre-Chr15 39801793 39804578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03403 5 76 Glycoside Hydrolase AT2G01630 62.500 1.89e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g03403 X8 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03403 K19891 K13107 gmx:100814734 187.578