Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03384 ATGGTTGAAAAAGAAGACTTGGGTTTGAGTCTAAGCTTGAACTTCTTTCAAAATACCCCAAAACAACCTCAACCTCTCAATCCCATATCCTCTTCTCCTTATTTCCATCCTCAACAAACTATCACTCCCTCGGTTCGAAACTTGAAACTTGGGATTGATGTGAATCGATTACCATGTACCGTTGTTGACTGCGAAGAAGAAGAAGAAGCAGGGATTTCATCTCCAAACAGTACGGTTTCGAGTGTAAGTGGAAAACGAAGCTCGAGAGAATTAGATAATGAAGTGGACAATAGAGGGAATATCAGTGATGAAGAAGACGCTGAAACCGCTAGAAAAAAGCTCAGACTCTCTAAAGACCAATCACTTATTCTAGAAGAAACATTCAAAGAACACAATACCCTTAATCCCAAACAAAAGTTAGCACTTGCAAAACAACTTGGCCTTCGTCCAAGACAAGTTGAAGTCTGGTTCCAAAACAGACGAGCCAGGACAAAGCAAAAGCAAACGGAGGTTGATTGCGAGGTGTTGAAAAGGTGTTGTGAAAATCTAACGGAAGAAAATAGGAGACTACAGAAGGAAGTTCAAGAGCTAAGAGCACTGAAACTTTCCCCTCAATTTTACATGCAAATGACACCACCCACTACTCTTACTATGTGCCCATCTTGTGAACGTGTGGCTGTTCCGTCTTCCGGTGTGGATGGATCCAACCGTCACATTTCTATGGCCCAAGCCCATCCTCGGGTTGTACCCATAGGCCCGTGGGCTTCTGTAGCTCCCATCACGCATAGGATGTTTGATGTTTTCCGTCAATGA 813 0.4317 MVEKEDLGLSLSLNFFQNTPKQPQPLNPISSSPYFHPQQTITPSVRNLKLGIDVNRLPCTVVDCEEEEEAGISSPNSTVSSVSGKRSSRELDNEVDNRGNISDEEDAETARKKLRLSKDQSLILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKQKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSGVDGSNRHISMAQAHPRVVPIGPWASVAPITHRMFDVFRQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03384 270 Gene3D - 115 165 - -
Trre15g03384 270 MobiDBLite consensus disorder prediction 71 86 - -
Trre15g03384 270 PRINTS Lambda-repressor HTH signature 138 147 IPR000047 GO:0003677
Trre15g03384 270 PRINTS Lambda-repressor HTH signature 147 163 IPR000047 GO:0003677
Trre15g03384 270 ProSitePatterns 'Homeobox' domain signature. 142 165 IPR017970 GO:0000981|GO:0006355
Trre15g03384 270 SMART HOX_1 109 171 IPR001356 GO:0003677
Trre15g03384 270 MobiDBLite consensus disorder prediction 87 107 - -
Trre15g03384 270 ProSiteProfiles 'Homeobox' domain profile. 107 167 IPR001356 GO:0003677
Trre15g03384 270 SUPERFAMILY Homeodomain-like 104 169 IPR009057 -
Trre15g03384 270 MobiDBLite consensus disorder prediction 66 107 - -
Trre15g03384 270 Pfam HD-ZIP protein N terminus 1 90 IPR006712 GO:0005634
Trre15g03384 270 Pfam Homeodomain 111 166 IPR001356 GO:0003677
Trre15g03384 270 SMART halz 167 210 IPR003106 GO:0006355|GO:0043565
Trre15g03384 270 Coils Coil 173 203 - -
Trre15g03384 270 FunFam Homeobox-leucine zipper protein HAT22 115 161 - -
Trre15g03384 270 CDD bZIP 160 199 - -
Trre15g03384 270 Pfam Homeobox associated leucine zipper 167 201 IPR003106 GO:0006355|GO:0043565
Trre15g03384 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 233 - -
Trre15g03384 270 CDD homeodomain 111 168 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03384 Trre-Chr15 39419549 39421031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03384 1 269 Homeobox Transcription Factor Family AT4G17460 57.912 3.34e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g03384 HD-ZIP_N 3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03384 K09338 - gmx:100813367 343.969