Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03383 ATGATGATGGTTGAAAAAGAAGACTTGGGTTTGAGTCTAAGCTTGAACTTCTTTCAAAATACCCCAAAACAACCTCAACCTCTCAATCCCATATCCTCTTCTCCTTATTTCCATCCTCAACAAACTATCACTCCCTCGGTTCGAAACTTGAAACTTGGGATTGATGTGAATCGATTACCATGTACCGTTGTTGACTGCGAAGAAGAAGAAGAAGCAGGGATTTCATCTCCAAACAGTACGGTTTCGAGTGTAAGTGGAAAACGAAGCTCGAGAGAATTAGATAATGAAGTGGACAATAGAGGGAATATCAGTGATGAAGAAGACGCTGAAACCGCTAGAAAAAAGCTCAGACTCTCTAAAGACCAATCACTTATTCTAGAAGAAACATTCAAAGAACACAATACCCTTAATCCCAAACAAAAGTTAGCACTTGCAAAACAACTTGGCCTTCGTCCAAGACAAGTTGAAGTCTGGTTCCAAAACAGACGAGCCAGGACAAAGCAAAAGCAAACGGAGGTTGATTGCGAGGTGTTGAAAAGGTGTTGTGAAAATCTAACGGAAGAAAATAGGAGACTACAGAAGGAAGTTCAAGAGCTAAGAGCACTGAAACTTTCCCCTCAATTTTACATGCAAATGACACCACCCACTACTCTTACTATGTGCCCATCTTGTGAACGTGTGGCTGTTCCGTCTTCCGGTGTGGATGGATCCAACCGTCACATTTCTATGGCCCAAGCCCATCCTCGGGTTGTACCCATAGGCCCGTGGGCTTCTGTAGCTCCCATCACGCATAGGATGTTTGATGTTTTCCGTCAATGA 819 0.431 MMMVEKEDLGLSLSLNFFQNTPKQPQPLNPISSSPYFHPQQTITPSVRNLKLGIDVNRLPCTVVDCEEEEEAGISSPNSTVSSVSGKRSSRELDNEVDNRGNISDEEDAETARKKLRLSKDQSLILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKQKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSGVDGSNRHISMAQAHPRVVPIGPWASVAPITHRMFDVFRQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03383 272 Pfam Homeobox associated leucine zipper 169 203 IPR003106 GO:0006355|GO:0043565
Trre15g03383 272 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Trre15g03383 272 Pfam HD-ZIP protein N terminus 3 92 IPR006712 GO:0005634
Trre15g03383 272 Gene3D - 117 167 - -
Trre15g03383 272 SUPERFAMILY Homeodomain-like 106 171 IPR009057 -
Trre15g03383 272 Coils Coil 175 205 - -
Trre15g03383 272 SMART HOX_1 111 173 IPR001356 GO:0003677
Trre15g03383 272 CDD bZIP 162 201 - -
Trre15g03383 272 CDD homeodomain 113 170 IPR001356 GO:0003677
Trre15g03383 272 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Trre15g03383 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 235 - -
Trre15g03383 272 FunFam Homeobox-leucine zipper protein HAT22 117 163 - -
Trre15g03383 272 Pfam Homeodomain 113 168 IPR001356 GO:0003677
Trre15g03383 272 PRINTS Lambda-repressor HTH signature 140 149 IPR000047 GO:0003677
Trre15g03383 272 PRINTS Lambda-repressor HTH signature 149 165 IPR000047 GO:0003677
Trre15g03383 272 SMART halz 169 212 IPR003106 GO:0006355|GO:0043565
Trre15g03383 272 MobiDBLite consensus disorder prediction 73 88 - -
Trre15g03383 272 MobiDBLite consensus disorder prediction 89 109 - -
Trre15g03383 272 MobiDBLite consensus disorder prediction 68 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03383 Trre-Chr15 39419543 39421031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03383 2 271 Homeobox Transcription Factor Family AT4G17460 58.054 4.06e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g03383 HD-ZIP_N 3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03383 K09338 - gmx:100813367 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00548 9 3958765 3960231 Trre15g03383 15 39419543 39421031 PCT