LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g03379	ATGAGCCGTCTATTTGATATGCTTGGTGTTCTTTATCCTCGAAGAGAACCTTGGAGGATCAAGGTTCGTGTTATTAGTTTGTGGACTGTCAATTCGGTTTTTAGATCTAATCAAGTCAATTCCCTTGATATGGTTCTCATTGATGAGAAGGGGGACAAAATTCAAGCTTCTGTTCGTCGTCAGCTTATTTATTTGTTTTTGTCCAAGATTGTAGAAGGAAATATATATAAGATGTCTCATTTTATTGTTTTTCCAACTGATGATCGTTATCGAACAACTTTTTATCCTTATAAACTTATGTTTACGATGAAAACCAAGGTTCGAAATTGTCCAAATCATACTATTGATCGGTATGGTTTTAGTTATACCAATATTAACCAGATATGTTCATTTGGAGCTGATTATTGTTATTTAATTGATGTTATTGGTGTTGTTACTGGTATAACTATCGAGAGGGAGTATATTCATGATGCGAAAATGACAAGGATGATTATTCTTGAGTTAACTGATCATAGTGGTAAAGTTGAATGTGTTTTGTTTGGTGAATATGTGAGATTATTCCAAGAGTTGATTGCGGAAAATAATGGGAAGCTTCCTGTTATTGTGATTCAGTTCGGAAAAGTTAAATTATTTAGAGACAAGGTGTCTATCCAGAATGTTGATTTTGCTACCAGGATCTATTTTGATCCTCCTACTCAAGATGTTCTTGCTTTCAAAAATGGTATTTCTCTTCATCAAGTTAATTATGGTGTAGATATTTCTTTGATTGATCCTCCAAATAGTATATTATTCGAGGATGAGTTTTTGGCCAAATATCCAAAGAGAACTATATCTCAGTTAGTTAATGGTAGTGAAGATGGTATATATGTTGTTAGTGGTGTTGTTACTGGCGTCGTGGGAGGTGAAGATTGGTGGTATCCAACATGTAGTTGCCTTAAAATTGTTTCCCGTGAGCCTCGAGGTTATTATTGTGAAGCTTGTGTGAAATATTTTTTACACATGGTTCCTAGGTACAGGGTTAAGGTCAATGTTGAAGATGCTACTGGTCAGGCTGTTTTCGTTTTGTTTGAGCTTGATATGTATAATCTTATTGATAAAAAGTGTGCTGAATTGTATCTCAATGACAGGGTTGAAGATGATGGATCCTATCCCCTTGAGTTTGATTTATTGTTAGGGTTGAAATTGTTGTTTCAAGTTGAAAAAGGTTTAACATCAGATATTCAATTGGATGGATCCTATAGAGTTAAAAGGGTTTGTGATCATGAAATTATCGTTGCAAAATTTGATGTTGGAAGTTTCGATAATAGTGGTGGTAGTCGAATCGTTGTTAGAATTCCTGATGAAGCACACTTTCAAACAGTTGTTGATCCCAAAGAGAAGTTGATCTCTGTGCCATGGTCATTTGTTGAGGTTTGGAAAAGAGCCAACCTTCCTCATTGTGGTGTGAAGATTTCATCTGGTGGAAAATCTATTAATGCTAGGTTCTGTGTATCTGATGATGCCTTTATGTTCTATGCGGACAAGGTTGCTGAATTCTTTGGCTTTGCTGAACCAACTAGGGTGACGATGACATACATACTCAGTGAGAACACCTTTTTCTTGGATGTTGTTGGTGATCCTGGTACTGAGGAGTCATCCAATGAAAATGAAATTGTTAGCCTCACTTCAAGTGGTGATGAATCTGACTATGATGAAGGTGATGATCAACTTAATGATTATCAGAATCAGCAAATGATTGTGTATAATGAAGATGTAAATGCACATTATGAGACTTTTCACACGGTTACCTGGTCTAAGACTGTGACTGAATCTATGGCTGCCTACAGGAGCAAGCAATCCCTGCATTTTATGAAGTTTATATGTAGAAGATTTCTTCAAAATCAACATATAATGCTATTGAAGTGTGAGGAGACTGGGTTTTCATACATGTGCAAGGTTGAGAGTTCAAAGAAAGCTGATGAACATGGTGTCTTTTTAAAACGAATTGGTGAGGGATGGTATAAGTTTAGAGATGAGCACAAGCTTAAGGTCGGTGATAACTTGTGGTTCGAGATGTCTTTTTATCCCTATGTGCTTAAGGTTTGGATTGATCGTAAGAAATGA	2103	0.3604	MSRLFDMLGVLYPRREPWRIKVRVISLWTVNSVFRSNQVNSLDMVLIDEKGDKIQASVRRQLIYLFLSKIVEGNIYKMSHFIVFPTDDRYRTTFYPYKLMFTMKTKVRNCPNHTIDRYGFSYTNINQICSFGADYCYLIDVIGVVTGITIEREYIHDAKMTRMIILELTDHSGKVECVLFGEYVRLFQELIAENNGKLPVIVIQFGKVKLFRDKVSIQNVDFATRIYFDPPTQDVLAFKNGISLHQVNYGVDISLIDPPNSILFEDEFLAKYPKRTISQLVNGSEDGIYVVSGVVTGVVGGEDWWYPTCSCLKIVSREPRGYYCEACVKYFLHMVPRYRVKVNVEDATGQAVFVLFELDMYNLIDKKCAELYLNDRVEDDGSYPLEFDLLLGLKLLFQVEKGLTSDIQLDGSYRVKRVCDHEIIVAKFDVGSFDNSGGSRIVVRIPDEAHFQTVVDPKEKLISVPWSFVEVWKRANLPHCGVKISSGGKSINARFCVSDDAFMFYADKVAEFFGFAEPTRVTMTYILSENTFFLDVVGDPGTEESSNENEIVSLTSSGDESDYDEGDDQLNDYQNQQMIVYNEDVNAHYETFHTVTWSKTVTESMAAYRSKQSLHFMKFICRRFLQNQHIMLLKCEETGFSYMCKVESSKKADEHGVFLKRIGEGWYKFRDEHKLKVGDNLWFEMSFYPYVLKVWIDRKK	700

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g03379	700	Gene3D	-	270	419	IPR012340	-
	Trre15g03379	700	CDD	RPA1_DBD_B_like	140	239	-	-
	Trre15g03379	700	CDD	RPA1_DBD_A_like	19	107	-	-
	Trre15g03379	700	Pfam	Domain of unknown function DUF223	44	111	IPR003871	-
	Trre15g03379	700	Gene3D	-	582	700	IPR015300	-
	Trre15g03379	700	SUPERFAMILY	DNA-binding pseudobarrel domain	628	698	IPR015300	-
	Trre15g03379	700	MobiDBLite	consensus disorder prediction	539	565	-	-
	Trre15g03379	700	PANTHER	OS03G0429900 PROTEIN	11	240	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Trre15g03379	700	Gene3D	-	114	248	IPR012340	-
	Trre15g03379	700	SUPERFAMILY	Nucleic acid-binding proteins	120	247	IPR012340	-
	Trre15g03379	700	SUPERFAMILY	Nucleic acid-binding proteins	11	112	IPR012340	-
	Trre15g03379	700	Gene3D	-	7	110	IPR012340	-
	Trre15g03379	700	MobiDBLite	consensus disorder prediction	542	559	-	-
	Trre15g03379	700	SUPERFAMILY	Nucleic acid-binding proteins	275	399	IPR012340	-
	Trre15g03379	700	Pfam	Replication factor-A C terminal domain	299	373	IPR013955	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g03379	Trre-Chr15	39322234	39326179	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g03379	1	381	Core DNA Replication Machinery Family	AT5G08020	23.750	1.79e-14	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g03379	-		-	tpra:123908197	406.371