Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03339 ATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATACAAAAGGAATCAACCCTTCACTTGGTCCTAAGGCTCAGAGGAGGAACCATGATTAAAGTGAAGACTTTAACTGGAAAAGAGATTGAAATTGACATTGAGCCAACTAATACAATTGATCGTATCAAGGAACGTGTTGAAGAAAAAGAGGGAATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGTAAGCAGCTTGCTGATGATAAAACTGCTAAAGAGTACAACATTGAGGGTGGTTCGGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAA 462 0.4459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTNTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03339 153 FunFam NEDD8 protein 77 153 - -
Trre15g03339 153 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Trre15g03339 153 PANTHER UBIQUITIN 1 78 - -
Trre15g03339 153 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Trre15g03339 153 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre15g03339 153 SMART ubq_7 77 148 IPR000626 GO:0005515
Trre15g03339 153 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre15g03339 153 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trre15g03339 153 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trre15g03339 153 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Trre15g03339 153 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trre15g03339 153 CDD Ubl_ubiquitin 1 76 - -
Trre15g03339 153 CDD Ubl_NEDD8 79 152 IPR038738 -
Trre15g03339 153 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Trre15g03339 153 Gene3D - 1 77 - -
Trre15g03339 153 Gene3D - 78 153 - -
Trre15g03339 153 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trre15g03339 153 FunFam Polyubiquitin 3 1 76 - -
Trre15g03339 153 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Trre15g03339 153 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03339 Trre-Chr15 33606934 33610248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03339 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.99e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03339 K12158 - csav:115709275 296.204