Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03330 ATGACTACTATCAAAAATGAATCTGTCGAAATGTGGTCGTCTGACGGATCTGATGATGAGAGCATAATTATTCCTAATCCTAAGGATTCCTATCAATATGTGGAAACAGTTGGTCCAAGTGAGGAGGAGGATAATGCCAGCAACTGTGACATGCCTAAATTTCGAAATGACCGTGTATTTGGTTGGGAACTTCTCATCACCAGGGCTTATGCAAGCTTGAAAAAACAGCAGTTTTTGCATGTACCAAATAAGTGCTTCAGGCGTGTTCTTAAGGGTAGGGATAGTATTGTAATTAAAACTCAGCACAATGGAGACAGTATCAGGTGCACTATGATAACCTATGAAAGAAAGGAAGGCAAGCAGGAAATGTACTTGAGTAAAGGATGGTTCGAGTTTGTTAGTGTTAACAACCTTAAGAGGGGAGATAAGTTGCGGTTCCAACTCTCAAATCCACCCGATGTTATGTTTGTGGAGATTATCCGAGGAAAACGGTCACGAAGAAATATATCTAAGTAG 516 0.4031 MTTIKNESVEMWSSDGSDDESIIIPNPKDSYQYVETVGPSEEEDNASNCDMPKFRNDRVFGWELLITRAYASLKKQQFLHVPNKCFRRVLKGRDSIVIKTQHNGDSIRCTMITYERKEGKQEMYLSKGWFEFVSVNNLKRGDKLRFQLSNPPDVMFVEIIRGKRSRRNISK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03330 171 ProSiteProfiles B3 DNA-binding domain profile. 64 163 IPR003340 GO:0003677
Trre15g03330 171 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g03330 171 Pfam B3 DNA binding domain 73 161 IPR003340 GO:0003677
Trre15g03330 171 SUPERFAMILY DNA-binding pseudobarrel domain 73 160 IPR015300 -
Trre15g03330 171 Gene3D - 42 163 IPR015300 -
Trre15g03330 171 CDD B3_DNA 72 161 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03330 Trre-Chr15 33203502 33204098 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03330 B3 4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03330 - K23514 tpra:123909626 120.938